BAC Information

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BAC

Clone NameMSMg01-389I07
Chromosome17 (Build37)
Map Location 32,715,144 - 32,715,272
singlet/doubletsinglet
Overlap genenone
Upstream genePknox1, Cbs, LOC623242, U2af1, Cryaa, Snf1lk, Hsf2bp, Rrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l, Wiz, A430107D22Rik, Pglyrp2, 4732474A20Rik, EG208285, Cyp4f16
Downstream geneLOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389I07.T7 (MSMg01no389_i07.b1)MSMg01-389I07.TJ (MSMg01no389_i07.g1)
ACCAG491755AG491756
length765757
length of high quality
(start - end)
99 (226 - 324)129 (379 - 507)
definitionCHROMAT_FILE: MSMg01no389_i07.b1 PHD_FILE: MSMg01no389_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:09 2005CHROMAT_FILE: MSMg01no389_i07.g1 PHD_FILE: MSMg01no389_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCCGACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCACAACAC
CACCGCGGAATCCACTTCTTACACCAAGCATAGGAACACAGAAAGAAGTG
GNCAATGCTTTGAGGAAAGGCCGAGGTGTAGTCTAGTCCAAGTGCTTAGA
GGCATATCCACCACTACACAGTATGGATGGTAAGACCAGAACTCACGGGA
AGAAGTGTCTTCCAACGGACAGTCCTCTCTTCTATTGTGGAGTCATGGCA
GAGTCTCCTGTGCATGATAAGCAGAGGATTCCCCAAGTGCCTTTGTCATC
TGATGAGTGCGCTCTGATATGGCGGTGGTTTTTAAGCACAGCCTGACTAA
CCATCCTTCCCCTCTCTTGTGTCCGCCTTACGCTAGCTTCCAAGGACCAC
ACGTCTACAGCATCAGCTCTCTTGCTCCCCACAACTGGGCTGACATTCCA
CCTCTTCTTTCCTCCCCCTCTGGCACTTTACGAGACATGGCCTCTCACCC
TGCACTTCACCCCAGTCCCCCCACCCCCTCCCTCTGCCTGGACTTCTACC
CGTCGTCATCCTCCCTGTCTCATCCCCCCCCTGTTACCATGCCCGTCCCT
CACTCATCCATCCTTCCTGCCCGTTCCCTTTCGACCGCCCCGCCCTATTC
CTTCTTTCCTTCCCGCCTTCCTTCCTTTCCTCCTCCAGCCCCCTATCCTC
CGCCCTCCCCTCCCTCCTCCCTTTGTCGCGCCCTCCCTTCCCTCCCCCCC
CTTCCCCCCCTTCCA
NAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTCAGCAACTCTCCCCAGAGGCTAGGAGGCCATGA
ATGGCAGTAGAAATGTCACAAGGTGGCAACCACTGGGCCAGGGCAATCGA
GGACAGGCTCAGCGACTGCATCCTGCGAGGTATATGGACACAGGTGAGAT
TCTGAGGCAGAGGAGAGAGATAGGAATTGCTCTATAGCCACACCAGAGCC
ATGAGCATATACTGTGTGCTGTGTGCAGAGTAAGGAGGAGGGAGGAGATT
CAGGGTCTTGCAGGGAAAGACAGGTATATCATTGGAAGAACAAGATAGGA
AGGGACTGCCAGGAGATGTACTGTTCAGCATCTAAAATGGACCAGAGCAT
GAAGCTCAGGCTCAGCTGACAAAACCATTGGTCTCCTGGTCCAAGTAGCT
CTATAGAGCCACCAGGTACCAGAAAGCTACCCAAGCTGTAAGAGAGCTGT
TTCTGTTCAGAGCCAGGACCTTCCCTGCCAGGCCCCAGCCTGGTACCTTT
CATCAGCAGCAGTCCGTGCTGAAGCACCTCTTTCCTCTCCTCCGAGACTT
GTGCATCCCCTGCTTCCAATCAGCAAACAGTTTACACAGTTGTCAATCGA
CGCGGCAAGAGGGGAATTATTTTATTCCTTTCCAAGGGTTCGCTGGTTTC
CTGGCCTACTCGGACAGCTTCCCGGTTCTCTTGGCCTCAACCTCCACTCT
CATCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_i07.g1 MSMg01no389_i07.g1 CHROMAT_FILE:
MSMg01no389_i07.g1 PHD_FILE: MSMg01no389_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:09 2005
         (129 letters)



>mm_chr17_32714944_32715472
          Length = 529

 Score =  250 bits (129), Expect = 3e-71
 Identities = 129/129 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   catctaaaatggaccagagcatgaagctcaggctcagctgacaaaaccattggtctcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 catctaaaatggaccagagcatgaagctcaggctcagctgacaaaaccattggtctcctg 270

                                                                       
Query: 61  gtccaagtagctctatagagccaccaggtaccagaaagctacccaagctgtaagagagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gtccaagtagctctatagagccaccaggtaccagaaagctacccaagctgtaagagagct 210

                    
Query: 121 gtttctgtt 129
           |||||||||
Sbjct: 209 gtttctgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 129
Length of database: 529
Length adjustment: 8
Effective length of query: 121
Effective length of database: 521
Effective search space:    63041
Effective search space used:    63041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)