Query= MSMg01no390_h10.b1 MSMg01no390_h10.b1 CHROMAT_FILE:
MSMg01no390_h10.b1 PHD_FILE: MSMg01no390_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:23 2005
(550 letters)
>mm_chr17_59878750_59879699
Length = 950
Score = 946 bits (489), Expect = 0.0
Identities = 532/554 (96%), Gaps = 16/554 (2%)
Strand = Plus / Plus
Query: 1 gaattcttgtactttatcataaaactggtaaatatagtgcactaattcttcttttaccta 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattcttgtacattatcataaaactggtaaatatagtgcactaattcttcttttaccta 268
Query: 61 taatgaccaccgtctgtttgtttgtttgt-ttgtttgtttgtttgtttgtttgttttagg 119
||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 269 taatgaccaccgtctgttt---------tcttgtttgtttgtttgtttgtttgttttagg 319
Query: 120 ctcctcataggaaagaacattattgtgaagtaatgttaggatgtttactcaaagaagaat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctcctcataggaaagaacattattgtgaagtaatgttaggatgtttactcaaagaagaat 379
Query: 180 tagtgaaagataattgaattaggagaaccagataaagaatgaaatatacacatgcctatg 239
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 380 tagtgaaagataattgaattaggagaaccagataaagaatgaaatatacaaatgcctatg 439
Query: 240 cacttccctttccagctaggattctgtcatagttttt--gtatggtcaggaagaatgtgg 297
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 440 cacttccctttccagctaggattctgtcatagtt---aggaatggtcaggaagaatgtgg 496
Query: 298 actctacttgatataatttctctgagagatgagcttcagagagatatctatatcatcatt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 actctacttgatataatttctctgagagatgagcttcagagagatatctatatcatcatt 556
Query: 358 ggctggagagtgatttgttggtgcttaacacttgatgggaaaaaa-tgaacagactctca 416
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 557 ggctggagagtgctttgttggtgcttaacacttgatgggaaaaaaatgaacagactctca 616
Query: 417 agatctcatagcctcatagaaaagagacattaaacaatttgttgtgataaaataagaact 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 agatctcatagcctcatagaaaagagacattaaacaatttgttgtgataaaataagaact 676
Query: 477 caagagatatttttggtagttatagctaanattaagcatgattgaagaacaagttttaag 536
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 677 caagagatatttttggtagttatagctaaaattaagcatgattgaagaaaaagttttaag 736
Query: 537 gtaataagtagtgt 550
||||||||||||||
Sbjct: 737 gtaataagtagtgt 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no390_h10.g1 MSMg01no390_h10.g1 CHROMAT_FILE:
MSMg01no390_h10.g1 PHD_FILE: MSMg01no390_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:23 2005
(568 letters)
>mm_chr17_60064062_60065029
Length = 968
Score = 630 bits (326), Expect = 0.0
Identities = 338/342 (98%)
Strand = Plus / Minus
Query: 227 agccagtacccccagagctccctgggactaaaccaccaatcaaagaaaacacatggtaga 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968 agccagtacccccagagctccctgggactaaaccaccaatcaaagaaaacacatggtaga 909
Query: 287 actcatgtctctagctgcatatgtagcagaggatgatctagtcggctatcaatgggagga 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 actcatgtctctagctgcatatgtagcagaggatgatctagtcggctatcaatgggagga 849
Query: 347 caggctcttggtgttttgaaggttctatgtcccagtacaggggaatcccaggaccaggag 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 caggctcttggtgttttgaaggttctatgtcccagtacaggggaatcccaggaccaggag 789
Query: 407 gtgaaagtgtgtgggtcttttgagagtctcagaaaattacatatattttactgggaaaga 466
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 gtgaaagtgagtgggtcttgtgagagtctcagaaaattacatatattttactgggaaaga 729
Query: 467 agtaagtccaaggtcaattactgaatatatgacttttgccgcaagcttggttcactgatc 526
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 728 agtaagtccaaggtcaattactgaataaataacttttgccgcaagcttggttcactgatc 669
Query: 527 ctttaaaactctaaatccaaaccctgacatataaaacaacac 568
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ctttaaaactctaaatccaaaccctgacatataaaacaacac 627
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
