BAC Information

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BAC

Clone NameMSMg01-391C11
Chromosome17 (Build37)
Map Location 8,657,015 - 8,657,160
singlet/doubletsinglet
Overlap genenone
Upstream geneFndc1, EG634588, LOC100040748, LOC100040760, LOC667102, Tagap, Rshl2a, LOC100040822, Rnaset2a, Fgfr1op, Ccr6, LOC667114, Brp44l, Sft2d1, LOC100038858, 9630019K15Rik, EG435502, LOC433063, T2, T
Downstream geneLOC100040817, Pde10a, 1700010I14Rik, EG667165, EG667170, LOC666143
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391C11.T7 (MSMg01no391_c11.b1)MSMg01-391C11.TJ (MSMg01no391_c11.g1)
ACCAG492995AG492996
length780762
length of high quality
(start - end)
89 (319 - 407)146 (323 - 468)
definitionCHROMAT_FILE: MSMg01no391_c11.b1 PHD_FILE: MSMg01no391_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:16 2005CHROMAT_FILE: MSMg01no391_c11.g1 PHD_FILE: MSMg01no391_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGACGCTAAANGAATACCAAATTTTCGAAGACCCGCGGAATTCAANAG
NCCTTCCCCCCCAACGTAAGAGTTACTGGGNCTATTTTATAGACAAGGAA
AGTGAGGCCCTATACGACTTAATGGCTTCCACTTGTGGGCAACTCTGAGC
ATTCCAGGGTGCCGCAACTCAGAAAGCTCAAGTGGTCAAGACAGGACCAC
CAACCCCAACCTGTAAGAAGCAGACTGGCTCAGCAGACTGGCTCTGGGAC
TCAGGAACTTTAGGTGCAGACTGCTCTCAGACCCTCACTGAGTCTCACGA
AGACTCATATTATTATTAACAAACATTCTGATGCAAGCAGGCGTCCTACT
TCCATGACCAGGAAGTTCCCCTTTCTGCCTGAGCTCCTGAGGACACAGGC
TGTGTCCGNGCACGAACTAAAGTGGACTCTGGTGCCACAGACCACCCCAG
GGTACGGGGGTCCCTGGAATGAGGGTCCTCGAAGTCTAGGTGGGTAAGGA
TCCCGGCGTGATTAACCCCAACCACCCCGACGCCGTTTGAATCCGACAGT
ATTTTGCAGCTCCCACGCCGGGTTTTTCACCCCTTCCCCACCCCCCCTAC
CCCCCCGGCTGCCGCCTAACCCCCTTTTTACCCTCCTCTCCGCGAGCTCT
CACTCCCTCCCCCCCTCTTATCTCCCCCGCTCACCCCGGTCCACTTTACA
GACTTCCCCCACTCTCCCCCCCTACCCTCTATACCTCCCCCCCTCCCTAA
TACCCCCTCCCCTTCTCCCCCCTTACTCTC
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTCCCCGCGGAATTCCACGGNATTCTGAATTCCTCTGAAT
TCGTCTTGGGTAGCCACTGTCTAGGGTTTGGTCTTGACCCTGAGAGTCGA
TGACCCACAGGACTCTGGCAGTTCCCCCACACAGAGGGCAGCACAGCTCT
ACCCAGACGGGATATGCCAGAGTTCTTACCCCTCTCTTCTAGGCTGATCT
CCTGTAGCTTTCCCCAGTCACAAAGCACATCCCCCCAAGGTTCCTCACCA
CCATCCCAACCAATGNCTTGTTCACTCCTCTCTCCCCCATATCCTCACAA
CAGAGGTTTCTTCTATTCAGACAGCAGCAAGACATACTTCCCTCAAGGCA
GCTCCCAGAATCCTCTCCTGCCATTCATTCCCATCATCACCCACCAGAGA
CTCCGCTCTGTCTGCTCACCTCCAAGGCTCTGTAAAGAACTCAATCCAGG
TCCCTGCCAGACAAGTTGGTCTCTAGAATGCATAGTTGCGGGGCCAGAGA
GATGTTGCCCCCCCATTGAATATCCCTCCCTGCCCCTGTTCACAACCGCT
ATCCTTCTCCACTACCCCCCCTTATTCCTTCGTCACCCCTTACTTCTTCT
TTTTCCACCGCCCCTCCTGACTCCCGACGCTCTCCCTTTTTCTTGTCGCC
CTCCCTCTTTCTTGCGATTCCCCCCCCTTTCTCTCAATCACTTCCTTTTT
CCCTTCTTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_c11.g1 MSMg01no391_c11.g1 CHROMAT_FILE:
MSMg01no391_c11.g1 PHD_FILE: MSMg01no391_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:16 2005
         (146 letters)



>mm_chr17_8656815_8657360
          Length = 546

 Score =  267 bits (138), Expect = 2e-76
 Identities = 144/146 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactcctctctcccccatatcctcacaacagaggtttcttctattcagacagcagcaaga 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 346 cactcctctctcccccatatcctcacaacagaggtttcttctcttcagacagcagcaaga 287

                                                                       
Query: 61  catacttccctcaaggcagctcccagaatcctctcctgccattcattcccatcatcaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 286 catacttccctcaaggcagctcccagaatcctctcctgccattcattcccatcatcacct 227

                                     
Query: 121 accagagactccgctctgtctgctca 146
           ||||||||||||||||||||||||||
Sbjct: 226 accagagactccgctctgtctgctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 146
Length of database: 546
Length adjustment: 8
Effective length of query: 138
Effective length of database: 538
Effective search space:    74244
Effective search space used:    74244
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)