BAC Information

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BAC

Clone NameMSMg01-391F18
Chromosome17 (Build37)
Map Location 46,035,748 - 46,036,086
singlet/doubletsinglet
Overlap genenone
Upstream geneSupt3h, EG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363
Downstream geneVegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391F18.T7 (MSMg01no391_f18.b1)MSMg01-391F18.TJ (MSMg01no391_f18.g1)
ACCAG493151AG493152
length779813
length of high quality
(start - end)
342 (64 - 405)244 (72 - 315)
definitionCHROMAT_FILE: MSMg01no391_f18.b1 PHD_FILE: MSMg01no391_f18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:33 2005CHROMAT_FILE: MSMg01no391_f18.g1 PHD_FILE: MSMg01no391_f18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCACTTG
CATCTGCTGAGACAGGATCTCAAGTTGTTCAGGCTGGCCTTGAACTCACT
AATAGTTAAAGATGGCCTCAAACTCCTGATCCTCCTGCCTCTGCCTCCCA
GGTGCTGGCATTGTAGGTATGTGCTACCACAATGTGTTCTATGTGGTGTT
GGGAATCGAATTTCCAGCTTTGTGAGTGGCAAGCAAGCACCCTTCTAACC
GAACTATGCCCTAGCTTGTCTCCTTGAGTTCTTACTCTGAGATGTTTAGT
CTCTGAATCTCTTTGGTCAATCTCGAGCATCCTGGCCACAAGGAGAGGCC
ATATCAGACATGACAGAGACTCCGCTCTAGCCTGAACCACCTTGGCAGCC
CAAGACCGACCCAATTTACCAATGTAACTTTCCAGGATAAGGTCTTACAG
AGCAAAGCCAGGCTGTCCTTGCTACACCCTGTCCAAATTACCGACTTACG
ATCAACTAAATAATGATTGTTTAAAGCTACTACCTTTAGGGCCGGCCTCG
CTATTGCCCCCTCTCTAACTGTATTCCACCCCTTGCCAATCAGCTCTAGC
CCTTCGCCGTTGTCTGGACCGCACAATCCTCTTGGGCCCCCCCCCCTCCC
CTCTCCCTATTTAATAAACTACGCCCCCCCCTTCCCCCCTTTTCTCTTTT
CCCCACCCCCCCCCCCCTTCCTTTCCCCCTCCCCGTTTTTTTTTTTCCTT
TCCTCCTTCTTCTTCCCTCCTTCCCCCCC
ATGATAGTGGGAGGCCTGGNGGNCGCCTGGCTCAACACTTTAGGTGAACT
ATAGAAGTTTCCGCGCAATCAAGAACGGCAGGAGGTGGGCTGTAGAGAGA
GCCCAGGGGCGAAGAGCACTTGGCTGCCCTTGGAGAAGACCAGGTTTGAG
TCTCAGCACCCACAGGGCGAGTCACAACCATCTGCAGCTCCCATTCCAGG
GACTTATCATATAAATCTCATTTTAAAAATATTAAAAAGACCTATTTTTG
GTGGTAGCATGCCTTTGGCCCCAGCTGTCAGGAAACAGAGGCAGGCAGAT
TTTTGTGAGTTTTAAGTCATTCTATTCTATAGAACAAGTTCAAATATAGT
CAGGTATAGTTACTCAGAGACACCCTGTCTCAAAACTAATACAGACAGAC
AGACAGACGCCCCCACAAGTGTGTGAGGATCCCCTCTACGCCTTGTTTCG
CCTCAACTTGTACTCTTTTTTCCCGCCACCTGCCCTCGCCTCTCCCTCCT
TCTCCCTCCCCTCTCTTTCCCTTCCTTCTTCCGTCTCTTCTTCCTCCCCT
TCCCCCTCTCTTCTCCCCCTTTTCTCCCCTTTCTTTCCCTCTTCTCCTTC
TCCCTCCCCCTCTCCCTCTTTCTTTCTCTTTCTCCCACTTTCCTCCCCTC
CCCATCCTTCGCTTCCTTTTTTTTTTCTTTTCCCCCCGTTTCCCTCTTCC
CTCTTTTTCTCCCCCCCCCCTATCCCTTTTCCCTCTTTCCCTTTTTCTCC
CTTTCTTCCTTTTTCCCCTTCTCTTCCCCTTTTCTTTCTTTTATTCCCCC
TCTCCTCTTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_f18.b1 MSMg01no391_f18.b1 CHROMAT_FILE:
MSMg01no391_f18.b1 PHD_FILE: MSMg01no391_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:33 2005
         (342 letters)



>mm_chr17_46035346_46036086
          Length = 741

 Score =  574 bits (297), Expect = e-168
 Identities = 330/341 (96%), Gaps = 3/341 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   gatctcaagttgttcaggctggccttgaactcactaatagttaaagatggcctcaaactc 62
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 741 gatctcaagttgttcaggctggccttgaactcactaatagttaaagatggcctcgaactc 682

                                                                       
Query: 63  ctgatcctcctgcctctgcctcccaggtgctggcattgtaggtatgtgctaccacaatgt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgatcctcctgcctctgcctcccaggtgctggcattgtaggtatgtgctaccacaatgt 622

                                                                       
Query: 123 gttctatgtggtgttgggaatcgaatttccagctttgtgagtggcaagcaagcacccttc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttctatgtggtgttgggaatcgaatttccagctttgtgagtggcaagcaagcacccttc 562

                                                                       
Query: 183 taaccgaactatgccctagcttgtctccttgagttcttactctgagatgtttagtctctg 242
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 taaccgaactatgccctagcttgtctccttgagtttttactctgagatgtttagtctctg 502

                                                                       
Query: 243 aatctctttggtcaatctcgagcatcctggccacaaggagaggccatatcagac-atgac 301
           || | |   ||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 501 aaac-caagggtcaatctcgagcatcctggccacaaggagaggccatatcagacga-gac 444

                                                    
Query: 302 agagactccgctctagcctgaaccaccttggcagcccaaga 342
           ||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 443 agagactccgctccagcctgtaccaccttggcagcccaaga 403


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 741
Length adjustment: 9
Effective length of query: 333
Effective length of database: 732
Effective search space:   243756
Effective search space used:   243756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)