BAC Information

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BAC

Clone NameMSMg01-393M05
Chromosome17 (Build37)
Map Location 44,152,920 - 44,153,390
singlet/doubletsinglet
Overlap geneDscr1l1
Upstream geneTnfrsf21, LOC100043770, Gpr110, Gpr116, Mep1a, LOC100043332, Pla2g7, Tdrd6, Slc25a27, Cyp39a1
Downstream geneEnpp5, Enpp4, Clic5, Runx2, Supt3h, 4930564C03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393M05.T7 (MSMg01no393_m05.b1)MSMg01-393M05.TJ (MSMg01no393_m05.g1)
ACCAG494980AG494981
length7731,175
length of high quality
(start - end)
473 (60 - 532)---
definitionCHROMAT_FILE: MSMg01no393_m05.b1 PHD_FILE: MSMg01no393_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:51 2005CHROMAT_FILE: MSMg01no393_m05.g1 PHD_FILE: MSMg01no393_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTCCTTAAG
GATTACCTTGGAGTGGTAGCTGGAGGCACAGTCTTTGGGGCTTGCTTATC
CTAAAACTTGAGAGATGATGGGGGAAACCCATCATTCCACCTATGGTGAT
GGAGGATTCTTGGTTTGCTACTATCAGGCAAAGAGAAAAGAACAAAGACA
GAAAAGAGGGAGAAAGAATCTATCGAATGCCTGTAAGCATAAAGAAGCAA
AGCAAGCCCAGAGCTTTGACTAGGCACTCTGCATTGTTGGGATGGGATGA
CATATTGGCATATATGAGAGTGGTCGGACATGGGAGTTAAGCGTGAGAAG
AGCTGTGGTGGGTTCAGCCTGGGGTGTTGCTGAGTTTGGAAGGACCAGGG
GCATGTACATAAAAGGCTAGGATAAAATCTTCCAGATGCCAGAGAGACAG
GAAGCTCTTCCCTGATGTCAGGGATCTGTTCTAAAAGACAGCAGGATTCA
AGAGTTTCCAAACCCCACGGCATCCTTTTTCCTATGGTCACAGCGTTAGC
TCTGGTCTCATTTTATAGCCATCCATCCTTTTACTTTATACTAACAACAT
TTTTTTCCCATCTGCCAAGGAGGCTTGATTATTCCTTTATTTCAAAAGCA
TCTCTGAACTCCCGGACCCCAGCGAACCTTGACTGGGACACCATCTTACC
TCAATTTATCTTTCACTATCATATTCTTTACATTCGTTTGTTCCTTTCTC
TCCCCTTCCCCATATTTATTTTN
TATTTCTATTTTATATTCCTCTGTTTATACCATCTTCTGGTCTGCCCTCT
CTCTCCACCTTCTTCCCCTATCTCCTCATTTACCACATAATCTCTACATC
CGACTAAATACACATAATCCCATCACCTATCATCATTCATTTTACAGCCT
CACACCCTTGACGCCTCTCCCTCTATTCCTCCCTCTATCACCTCTCTTCC
TTTAATCTCTTCCCCTCGCCGTATCCTTCGCCTTCGTCGCCGTTCCTTAC
GTTTCGCCAGTTCATTCGCGTCGCTCCTTCTCTTACATCTCANCTCCACC
CTACTTATTCACCACTATCTCAACTCTACCAATATATCCCCTACCTAATA
TTATTACATGTTNACTTATTTCCTCTAATATCTCTATCTCTTCTTNTACT
TCCTTTCTCTGCTTTCTTTTCACCTCACTTTTATATTTCGTTATATTCTC
CTTATTCTATCTATACACTCTCCTTTCTATTCTCTCATCTCACTTTCATT
TCTTAATCTAAACTCTCTTGCCCATCCTATGTTCTTACCTTCTCTATTCA
CTCTCTTTCTACTCACTTATCCATCTTCATTTCCACAACTATCCTATCAC
ATCTCTCCCTATTTCCTCCTCCTCCTCATTCTCTATTTATTTTCTGTCAT
AAATTTTCCTTTCACCCACCTCTATTATCCTTCATTAAGCGCCCTTCATT
TTTTCCTTATTCTTTTCATTCCACCATTCACTCTCCTTGCTATTCTTCGA
CAACTTCTACTACACCTTATATTACTATTACAATATCTCACATCCTCTAT
CATCTATGTCTATACTTCCATACACACAATTTATCAGCACCTTCCAAATC
CATTATCCTCACCCATATTTCTACTAAATATATATACTACCATACCGATA
ATCATATACACATACTCTAATACATTAATACATATTCATAACCACAAATC
ACGACCACCTAATACACCACCACTCTATACTCTAATACCTCATAACTCCA
TTCTTACATATCACACTCAACATCTCTACACTGACTCACACTATATTATA
CGTCATACTACACACTATCATANTCACACCATCCTTCTCAATGATACCTC
TCTCGCTCAATCTCATCTCACTACCACCACCACTATTCTCCATCTCTCTA
TTNTACTTCCATTAATCAAACACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_m05.b1 MSMg01no393_m05.b1 CHROMAT_FILE:
MSMg01no393_m05.b1 PHD_FILE: MSMg01no393_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:51 2005
         (473 letters)



>mm_chr17_44152720_44153590
          Length = 871

 Score =  777 bits (402), Expect = 0.0
 Identities = 456/474 (96%), Gaps = 4/474 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggagtggtagctggaggcacagtctttggggcttgcttatcctaaaacttgagagatgat 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggagtggtagctggaggcacaggctttggggcttgcttatcctaaaacttgagagatgat 260

                                                                       
Query: 61  gggggaaacccatcattccacctatggtgatggaggattcttggtttgctactatcaggc 120
            ||||||||||||||||||||||||||| | ||||| | |||||||||||||||||| ||
Sbjct: 261 -ggggaaacccatcattccacctatggtaagggagggtgcttggtttgctactatcacgc 319

                                                                       
Query: 121 aaagagaaaagaacaaagacagaaaagagggagaaagaatctatcgaatgcctgtaagca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 320 aaagagaaaagaacaaagacagaaaagagggagaaagaatctatcgaatgcctgcaagca 379

                                                                       
Query: 181 taaagaagcaaagcaagcccagagctttgactaggcactctgcattgttgggatgggatg 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 380 taaagaagcaaagcaagcccagagctttgactaggcactctgcactgttgggatgggatg 439

                                                                       
Query: 241 acatattggcatatatgagagtggtcggacatgggagttaagcgtgagaagagctgtggt 300
           ||||||||||||| | |||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 440 acatattggcatacaagagagtggtcagacatgggagttaagcatgagaagagctgtggt 499

                                                                       
Query: 301 gggttcagcctggggtgttgctgagtttggaaggaccaggggcatgtacataaaaggcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gggttcagcctggggtgttgctgagtttggaaggaccaggggcatgtacataaaaggcta 559

                                                                       
Query: 361 ggataaaatcttccagatgccagagagacaggaagctcttccctgatgtcagggatctgt 420
           |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 560 ggataaaatcttccggatgccagagaaacaggaagctcttccctgatgtcagggatctgt 619

                                                                 
Query: 421 tctaaaagacag-caggattcaagagtttccaaaccccacggcatcctttttcc 473
           |||||||||| | ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 620 tctaaaagac-gtcaggattcaagagtt-ccaaaccccacggcatcctttttcc 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 871
Length adjustment: 10
Effective length of query: 463
Effective length of database: 861
Effective search space:   398643
Effective search space used:   398643
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)