BAC Information

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BAC

Clone NameMSMg01-394D03
Chromosome17 (Build37)
Map Location 11,382,410 - 11,382,902
singlet/doubletsinglet
Overlap genePark2
Upstream geneQk, LOC675815, Pacrg, LOC100041113
Downstream geneAgpat4, Tdgf1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394D03.T7 (MSMg01no394_d03.b1)MSMg01-394D03.TJ (MSMg01no394_d03.g1)
ACCAG495309AG495310
length7571,130
length of high quality
(start - end)		496 (52 - 547)---
definitionCHROMAT_FILE: MSMg01no394_d03.b1 PHD_FILE: MSMg01no394_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:29 2005CHROMAT_FILE: MSMg01no394_d03.g1 PHD_FILE: MSMg01no394_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTTGTGCTCAATAAAAAAGAATTATTCAAGCCTTTGAGT
TAAAGAACTCTTGTTCTGTTTAGGATGAAGGAAAATTGATTTTTAAATTA
TAATGAAACTCACATTACTCAAAATGTTCCATCTTAACCATTTGTAAGTG
CTAAGTCTACCCCAGGCAGCGAGAAGTGCACCCACATTACTGTACACCCC
ATCTTCAGAACTGTCAATGAGGCTATTTTGTTTCTTTAACTCAGTAAACA
CCACAGTGGCTAAAGTGGCTGATATTGCCATGGTCTTTTTTTAACTGTTG
TTGAGTCTTTTTTTCCCTCAATGTTTTCATTTCTTTTTTTTTCTTTTTTT
CTTTTTTTCTTTTTTTTTTTTTTTGGGGTTACAAAATTTTACCAGCCTTT
GAAAATTACAAATAAAATTAAAGCAAGATTAAAAAGTAAACAAGGTCATG
TGTACAAAGCTTAGGGATTAAAGAATACAAATGTTGGGGGCTTCATGAGG
CTGAAAATGCCCATGAGAAATAATGGAGAAGAAAACAGGACCAAGTTGGG
AGAGTGTGGTACCATGGTGTAAGCTAACTGGCTTAACTAGTTGACTAGCA
GNTGACTAGCTTCACAGGATCTCTGGCAGTGTGGGCCAGTAGAGGACCCT
CTGTTGGGCAGGATGGCCCCAATTATATCTGGTAATAAAGTCACTGTCCA
CGCCCCN

ATTTGCCAGATGGTCTGAGGAAGAATCCTCAATACCAAATCCGCATTCCA
CAAAACAGAGGGAGGANANAGTATAATAATTTTCCCCAATATAAATCCGC
TATTCTANTGCTCAGGAACTGCGAGGTGGAGGCGTCGATGATCAAGTCCG
CGAGACTTACTTAATCTCCTATCCAACACTTACAACACACCGGTCATATA
CGGCCTTCTCTCTCAGTACAGCTCGTGCGTGATACTGATTGTAATCGATC
ACTCATGCGAGACTAGGAACTCACAGTCTGTCTGATTGTGTTACACTCCT
GCTGTACCTGCGATATCCATCGAATCAGCCACACTCGACCTACCGTTCTC
TTATTAATTCTATATCCTTGTTCGACCTTCTGACCTCGCATGTGAAGATC
GGCGTTTCTTTCGCTCCTTTGTTCCACAATATACGTACATTTCTTTCTCT
CCCCTATCGCGCGTATCCCTCATTGACACGACCTCCATTCTCCATTATCT
GTCCTTGCCGCTCTATTTCGATTTATCCCTATATATCGCGCGCTACGATC
GCATAGTTTCCATCCGATCGTCGTGCGCGTCGCCACTCCCTACGGTTATT
CGTCGTATCCGTCGTCGTTCGCCGTACGCATAGTTATTTGAATCGACCGT
ATAAAACAGCCGGAAGCCACCCTGATCGCTAGCTATACGTATCGCCATAT
GTTTAGTTCGCTCGCGCTCCACACACATTTGCACAAGCGATATGAAAACG
GGGCAAATAAATTGTGACGACAAATCAGGAAGACCTGAGCTAAGATGTGC
CATACCGTGCGCACACGAGCCCGATACTGTGCGCTATTATAATGCCGAAA
GCGATAAGCCGACGATACGGGCGATAACATGTTCGTCNATTCCCGTCCGA
ATACGCGTAATATAGCCTTGTACGCAACGGATGGGCGAATAAGCACCACA
CCCCCTGCTTATGCGCTCTATATATTTGTAGAGTATTTCNCCATGTCGCT
ATTCACACTGCGAACTATCCTATCGCCCCGCCTACTCGTAAGCCTCCGCA
TANCGCCTGTCACCCGCGAATTATAAATCGATCTCGCAACCCGTTAGAAC
TAAGCCGTACTGATTAAATTCCACGCGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_d03.b1 MSMg01no394_d03.b1 CHROMAT_FILE:
MSMg01no394_d03.b1 PHD_FILE: MSMg01no394_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:29 2005
         (496 letters)



>mm_chr17_11382166_11383063
          Length = 898

 Score =  862 bits (446), Expect = 0.0
 Identities = 482/496 (97%), Gaps = 7/496 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttgtgctcaataaaaaagaattattcaagcctttgagttaaagaactcttgtt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gaattccttgtgctcaataaaaaagaattattcaagcctttgagttaaagaactcttgtt 678

                                                                       
Query: 65  ctgtttaggatgaaggaaaattgatttttaaattataatgaaactcacattactcaaaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ctgtttaggatgaaggaaaattgatttttaaattataatgaaactcacattactcaaaat 618

                                                                       
Query: 125 gttccatcttaaccatttgtaagtgctaagtctaccccaggcagcgagaagtgcacccac 184
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gtcccatcttaaccatttgtaagtgctaagtctaccccaggcagcgagaagtgcacccac 558

                                                                       
Query: 185 attactgtacaccccatcttcagaactgtcaatgaggctattttgtttctttaactcagt 244
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gttactgtacaccccatcttcagaactgtcaatgaggctattttgtttctttaactcagt 498

                                                                       
Query: 245 aaacaccacagtggctaaagtggctgatattgccatggtctttttttaactgttgttgag 304
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 497 aaacaccacagtggctaaagtggctgatattgccatggtc-ttttttaactgttgttgag 439

                                                                       
Query: 305 ---tctttttttccctcaatgttttcatttc-tttttttttctttttttctttttttctt 360
              | |||||||||||||||||||||||||| ||||||||||||||||||||||||  ||
Sbjct: 438 ttttttttttttccctcaatgttttcatttcttttttttttctttttttctttttt--tt 381

                                                                       
Query: 361 tttttttttttttggggttacaaaattttaccagcctttgaaaattacaaataaaattaa 420
           ||||||||| | || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tttttttttgtgtgtgtttacaaaattttaccagcctttgaaaattacaaataaaattaa 321

                                                                       
Query: 421 agcaagattaaaaagtaaacaaggtcatgtgtacaaagcttagggattaaagaatacaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agcaagattaaaaagtaaacaaggtcatgtgtacaaagcttagggattaaagaatacaaa 261

                           
Query: 481 tgttgggggcttcatg 496
           ||||||||||||||||
Sbjct: 260 tgttgggggcttcatg 245


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 898
Length adjustment: 10
Effective length of query: 486
Effective length of database: 888
Effective search space:   431568
Effective search space used:   431568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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