BAC Information

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BAC

Clone NameMSMg01-395I16
Chromosome17 (Build37)
Map Location 49,761,358 - 49,761,601
singlet/doubletsinglet
Overlap geneKif6
Upstream geneLrfn2, 1700008K24Rik, LOC672972, Mocs1, Daam2
Downstream geneEG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl, Plcl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395I16.T7 (MSMg01no395_i16.b1)MSMg01-395I16.TJ (MSMg01no395_i16.g1)
ACCAG496335AG496336
length767792
length of high quality
(start - end)
244 (72 - 315)239 (77 - 315)
definitionCHROMAT_FILE: MSMg01no395_i16.b1 PHD_FILE: MSMg01no395_i16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:25 2005CHROMAT_FILE: MSMg01no395_i16.g1 PHD_FILE: MSMg01no395_i16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAATACTTTCTGTGAGTATTACTCTAAAATTATATCTCAATCTA
ATCAAAACTTTGATAGAAGGCCTAACACGTGGGAGGCCCTTGATATGTGA
TTTGTGATGGGCCGACCAAAATGAACTTCCTACAGGGAACCTTTCAGAAT
CTATCCTGTGGTGACTCCGTATCATCTTGAAGGCTCCTGGTACAGCTTGT
TTAGATGGATTTCCTAGTCTTCAGGGAAGTGTGGTGGGGAACGCTTTATT
GACTCAAGGTCCCCATTTATCATATGGAAGAAGCCAGAGAGCCCTGTTCA
GCAGCAGCCTCCCAGAGACTCTGCAGGAGGGCTAATACAATACCAGAGTA
GATCAGAGTCCCCCGACCTCTTTAGAACCCACACTTGCATGGTGGTCATG
TGTTCTGTGGACCTCTGTGCCATGCTGGTATAGAGTGTGAAGTATAGATT
CTGACTCACTAACCGCTTTTGTTACCACATCATACATGCATTTGCCTCCT
GTGTCCTTTTACCCGTGTTTTCCCATCCTGTGAGCCGTGTTCCTTGTCCC
GTGTTTATATTCCCTTTTCCCGGCATCGCCCATTACTTTGCGCATTCTTT
ATTTTTTTTTTATCCCCTAATTGTTGGCAACTTTCCCTTTTTTTTTCCTC
TTCGCGCCTATTTTCTTTCTCCTTCCGTTTTTCCTCCCCTCTCTCCCTTT
TTATTCTTATTTCTTTN
CCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTGACATGTCATGGTGTGAAGTA
GAAGTCAGAGGACAACCTTGTAGACCTTGTAGAGAGAGAGACTGCGTAGG
GTTATGGGTCCCTCGGAAGTGGGATGTGGGAAGTAGACCAGGCTTACCCC
ATGCCATTGCGTCATTGCCGGGTGGGAGTTGGGCTGTAGGGATGCCATGG
GACACCGCTCCGGGAGTGGGAAAGTGCAGTCTGAGGAGAGGGACAGCTGG
AGCTGGCTGGTTTTGGTGGGTTCCTGGGCCTGCAAGGAAGCAGGGACATC
TGGTTCTCTTGATCTCGAACACCCAGGCTCTACTGGGAGCCATATTAGAG
CTGAGAATGGACCGCCGTCCCTTGTTTTGGATCTATCCAGTGGCCTGTGT
GCTCATCTATTTTCTTTTTCCCCCTTCCTCTTTTTCTCCTTTCCCCATTT
CTTTTTTTTTTCCCCTCCCTTTCTATTCCCCTTTTTTTTCCTTTTTCCCT
TTTTCTTTCTTCCCCCCCTTTTTCTCCTTTTCTTTTCCCCTTTCCCTTTT
TTCTTTTTCCCTCCTTCCCCATTTTCCTTTCTCCTCCCTTCCCTCCTCCA
TCTTTTTTTTTTTTTTTTTTTACCTTTATACATTATTTTATTTCTCCCGC
TTTTTCTTACTATCCCATTTCTTTTTCTTTCTTAACTTCTTCCCTTTGCG
TTCTTTTCTTTCCCTTTCACCGTTCTTTTCTCCCTTTAGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_i16.b1 MSMg01no395_i16.b1 CHROMAT_FILE:
MSMg01no395_i16.b1 PHD_FILE: MSMg01no395_i16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:25 2005
         (244 letters)



>mm_chr17_49761158_49761801
          Length = 644

 Score =  418 bits (216), Expect = e-121
 Identities = 237/244 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtattactctaaaattatatctcaatctaatcaaaactttgatagaaggcctaacacgtg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 gtattactctaaaattatatctcaatctaatcaaaactttgatagaaggcctaacatgtg 260

                                                                       
Query: 61  ggaggcccttgatatgtgatttgtgatgggccgaccaaaatgaacttcctacagggaacc 120
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 261 ggaggcccttgatatgtgatttgtgatgggccgaccaaaatgaactttgtacagggaacc 320

                                                                       
Query: 121 tttcagaatctatcctgtggtgactccgtatcatcttgaaggctcctggtacagcttgtt 180
           ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 321 tttcagaatatatcctgtggtgactccgtgtcatcttgaaggctcctggtacagcttggt 380

                                                                       
Query: 181 tagatggatttcctagtcttcagggaagtgtggtggggaacgctttattgactcaaggtc 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagatggatttcctagtcctcagggaagtgtggtggggaacgctttattgactcaaggtc 440

               
Query: 241 ccca 244
           ||||
Sbjct: 441 ccca 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)