BAC Information

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BAC

Clone NameMSMg01-397A16
Chromosome17 (Build37)
Map Location 54,307,147 - 54,307,385
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668506, EG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826, LOC100043471, EG668523, LOC629121, Gm324, Sult1c1, LOC100043829, EG435531
Downstream geneSlc5a7, LOC668529, 1700025K24Rik, Trp53-ps, LOC240117, EG629178, LOC100043833
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397A16.T7 (MSMg01no397_a16.b1)MSMg01-397A16.TJ (MSMg01no397_a16.g1)
ACCAG497474AG497475
length781849
length of high quality
(start - end)
404 (69 - 472)243 (72 - 314)
definitionCHROMAT_FILE: MSMg01no397_a16.b1 PHD_FILE: MSMg01no397_a16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:20 2005CHROMAT_FILE: MSMg01no397_a16.g1 PHD_FILE: MSMg01no397_a16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATGCGCGGAATTCT
ACCAGATTTCTCTTCTACCAGTACTCCTCAAACTATTCTACAAAATATAA
ACAGAGGGAACATAGCTAAACTCATTCTATGAGGCCACAGTCACCCTGAG
ACCTAAATCACAAAAAGACTCAAAAAAGAAAAAAAATCAGACCTGTCTCC
CTTATGAATATTAATACAAAAATACTCAATAAAATTCTCATAAACTGAAT
CTAAGAACACATTGAAAACAGCATCCACAATGGCCAAATAGGCCAGGAAT
ACAGGGGTGGTTTAATATGTATAAAATCCATCAATGTAATTGACCATATA
AACAAACAAAAACAAATTACACCATCATCTAATTAGACTCTGAAAAAGCC
TTTGACAAAATCCAACACTGCTTCATGTTAAAAGTTTTGGAAAGATCAGG
GATACAAGGGATATATACCTAAAAGGAATAAAACAAATATACCAGCCGAT
ACTTAACATCAAATTTAATGGAAAAAAACTTGAAACAATTCCACTAAATC
CAGAAAATGGAAAGGTTGTCCACTCTTTCCTACCTCTTTAAAAAGGATTA
TAGTTTTAGGGGGAAAAAACTACTTTGAAAGTAAGGGAAATCCGGGGGAT
CCACTTGAAAGGAAAAAACCCAAAGGGGGCCTCTCAAAAAGAAAGAAGTG
GTATCAATAAACCCCCCCAATTTCTCCAAAGGGTTATTGGCGGAAAAACC
CTTCCTCATTGGGGGGGCGTAATAAAAACAA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGTTTTCTTTTCTAATTGTCATATTGCCC
ACTGGGACCTGCTGGGACACAGATTAGTTACTTGCTCCCAATTCTGACCT
AATTTGAAATAAAACATCAAAGGGTAATATGGTGATTGAAGGACTTCTGG
TCATAAGGAATTTCTCTGTTTGAAGCCCACTATTGAGACAGCTTTAATAC
AAGAATAACGAATGCTTTCACAGGGCTATGCATGCCATGAGGTTTCTGGC
TGTGAACTTTCATTATATTTTATTAGAAGAGGATTTCATTATCTGCTCAC
CAGAGACTCTGTTGTTCCCCTCTTAATAAGATCTTGTAGACTAAATGCGA
TTGCTTTTGTTTCCCCCCCCCCACCTCGTCCTTGTTTTCTCCTCCACTTT
CTTCCTATTCTTCTTCCTTCCTTCCATCTCCTCCTTTCCTTCTCCTCCCT
TATTTTTTTTTCATTTCGCCCTCTCCCACCTTTTCCCCCCCCTTTATTTT
TAACCCCCCCTCCACCCCCTCATTCTTCACCTTTTTTTTTCTCTCTTCCT
CTTCCCCATCTCTAATCTTTCCTCAATTTCTTTTTTTTTTTCCATTCCTC
CCCCCTTTCTCTTTCTCCTCCTTCTTCCCCTTCTTTTTTATTTTATTCGC
CTCATTACCCCCTATTTTCTTTCTTTCTTCGTTTCACTACCCCTTCTCCA
CCCCTATCCTCTTTTTTCGTTATTTTATCTTCCTCCACATCATACTCCTT
TCTCTTTATTCGACGTATATCTCTCCATTCCTCCTTTCTTCCCGTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_a16.g1 MSMg01no397_a16.g1 CHROMAT_FILE:
MSMg01no397_a16.g1 PHD_FILE: MSMg01no397_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:20 2005
         (243 letters)



>mm_chr17_54306947_54307589
          Length = 643

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttttcttttctaattgtcatattgcccactgggacctgctgggacacagattagttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttttcttttctaattgtcatattgcccactgggacctgctgggacacagattagttac 260

                                                                       
Query: 61  ttgctcccaattctgacctaatttgaaataaaacatcaaagggtaatatggtgattgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgctcccaattctgacctaatttgaaataaaacatcaaagggtaatatggtgattgaag 320

                                                                       
Query: 121 gacttctggtcataaggaatttctctgtttgaagcccactattgagacagctttaataca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacttctggtcataaggaatttctctgtttgaagcccactattgagacagctttaataca 380

                                                                      
Query: 181 agaataacgaatgctttcacagggctatgcatgccatgaggtttctggctgtgaacttt 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaataacgaatgctttcacagggctatgcatgccatgaggtttctggctgtgaacttt 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)