BAC Information

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BAC

Clone NameMSMg01-397G01
Chromosome17 (Build37)
Map Location 46,358,672 - 46,359,066
singlet/doubletsinglet
Overlap geneXpo5
Upstream geneEG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363, Vegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh
Downstream geneRpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397G01.T7 (MSMg01no397_g01.b1)MSMg01-397G01.TJ (MSMg01no397_g01.g1)
ACCAG497732AG497733
length780813
length of high quality
(start - end)
398 (44 - 441)244 (77 - 320)
definitionCHROMAT_FILE: MSMg01no397_g01.b1 PHD_FILE: MSMg01no397_g01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:47 2005CHROMAT_FILE: MSMg01no397_g01.g1 PHD_FILE: MSMg01no397_g01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTAAGTTACCAGGTGCTGGTTTACATCCAATAGCCTCACAGCAATTC
TCAGGGCTACATCTAGAGAAGTGATCTAGGGTCTAAATTAATAAACATCA
CCAGACTCTCCCCCTCCAAAGAAGCCACAGACAGATGCTAATAGGCTAAT
TTACAGCGATGTAAAGTGCTGCCATTCACTAGTTTTGCCCTGTAGAAGTT
CAGGGGGGTTTCCTCAGTCAAGTGACCAGACCTTGAGAGTTGATTTATAC
TCCCAAGTGAATGTTACATCTCATCATTTAAATCCTCAGGGCCCTTGGGA
TGGCCATGACTGTGGCATGTCTTGTCCTAGTTAAATCATCCCTCCTGCCT
GGTTAACCCTGCCCACTAAGCACAACACGCAAGACAGAGTAAGATAGAGA
TAAGGCAGACCGACTAATTTAACTGCCCGAAGCACTTGCATAGAGGTAGG
AACTTCGGTTCTACTGTCAATGACGTTGTCTCAATCCCTCTGCTCCGCCT
CGTTGTGCCTCATTCCTTTTTCTGTTTCTACCATTCCCTCCCCTTGTGCC
CCCCTCCCGCCTACATAGCTTTGCCATTCTCCTTACATCCAAACTCTTAT
CCCCCCATCCTCCCTCCTTTCTTCTGCCCTCTTCATCACTTTTCCCCTTC
TATAATCCCTCTCTTCCGTATTACTTCCCGCCTGTCATCCCTTTACCTTT
TTTTTCCCTTTCTCTCCATCCTTTTCTCCN
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCCAGCCAGGGACACATAATG
AAACCCTGTCTCAAAAAAATAATTAATTAATTAACTAATTAATCGTTAAA
GGACTTAGAAAATGTCTGATGTGCGTTATGTAGTGGTTAAATTTGGCTGT
CACTCCTGTGTCAGTGTGTCCTGGGACAAGAGAGGATCTACCTAGGAGTA
GGTTGTAGTAACCAAGGGGAGATGGTTTAGCCAGCTCGTTTTCCAGGAGT
CTGGGTGGCAGTCTCTACTCCTTCTTCAGGCAGTCTCTGTAACCCCACCC
TCCATTCTCCTGTCTCCATGACTCAGTGGTCCTTCGGCCTCTCCAGCCCC
CAGCCTGTCTTGTCCAGCTCTTACTCTTTGATGCTTAGTTCCGCTCCCCC
TCTCGATAGACAGCCTTGTTTTCTTATTTCCCCCTCTCCCCTCCCCCTCT
GTTTCCCGCCCCCCTTTTTCCTTCTCATCTTCTCTTCTTCTTCTACTTTC
TTCTTTCTTCTAAATTATCCCTTTATTCTTCTCCTTTTTTTTATCTCCTC
CCCTTTTTCTCTTTCCTCCTCCTCTTTTTATTTTCCACACCCTGCTCTAC
CTCTTCCCTCTTTTTTTTTCTTCCCCCTCTCTCCCCCGTCCCTTCCCTTC
TTTTTCTTCTCCTCTAATCCCTTTTCCCCCTCTTCTCTCATCTCCATCTC
CCCCCCCCCCACTTTCCTTTTCTTTTTTTCTCCCTCGCCCTCTCTTTTTA
TATTTCTCTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_g01.b1 MSMg01no397_g01.b1 CHROMAT_FILE:
MSMg01no397_g01.b1 PHD_FILE: MSMg01no397_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:47 2005
         (398 letters)



>mm_chr17_46358469_46359266
          Length = 798

 Score =  748 bits (387), Expect = 0.0
 Identities = 393/395 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttaagttaccaggtgctggtttacatccaatagcctcacagcaattctcaggg 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ggaattcttaagttacaaggtgctggtttacatccaatagcctcacagcaattctcaggg 539

                                                                       
Query: 64  ctacatctagagaagtgatctagggtctaaattaataaacatcaccagactctccccctc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ctacatctagagaagtgatctagggtctaaattaataaacatcaccagactctccccctc 479

                                                                       
Query: 124 caaagaagccacagacagatgctaataggctaatttacagcgatgtaaagtgctgccatt 183
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 478 caaagaagccacagacagatgctaataggctaatttatagcgatgtaaagtgctgccatt 419

                                                                       
Query: 184 cactagttttgccctgtagaagttcaggggggtttcctcagtcaagtgaccagaccttga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 cactagttttgccctgtagaagttcaggggggtttcctcagtcaagtgaccagaccttga 359

                                                                       
Query: 244 gagttgatttatactcccaagtgaatgttacatctcatcatttaaatcctcagggccctt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gagttgatttatactcccaagtgaatgttacatctcatcatttaaatcctcagggccctt 299

                                                                       
Query: 304 gggatggccatgactgtggcatgtcttgtcctagttaaatcatccctcctgcctggttaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gggatggccatgactgtggcatgtcttgtcctagttaaatcatccctcctgcctggttaa 239

                                              
Query: 364 ccctgcccactaagcacaacacgcaagacagagta 398
           |||||||||||||||||||||||||||||||||||
Sbjct: 238 ccctgcccactaagcacaacacgcaagacagagta 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space:   306921
Effective search space used:   306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)