BAC Information

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BAC

Clone NameMSMg01-400B06
Chromosome17 (Build37)
Map Location 73,288,715 - 73,289,061
singlet/doubletsinglet
Overlap geneLbh
Upstream geneAlk, Ypel5
Downstream geneLycat, LOC668709, Capn13, LOC100043666, Galnt14, Ehd3, LOC240160, Xdh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400B06.T7 (MSMg01no400_b06.b1)MSMg01-400B06.TJ (MSMg01no400_b06.g1)
ACCAG499786AG499787
length794796
length of high quality
(start - end)		343 (43 - 385)447 (74 - 520)
definitionCHROMAT_FILE: MSMg01no400_b06.b1 PHD_FILE: MSMg01no400_b06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:15 2005CHROMAT_FILE: MSMg01no400_b06.g1 PHD_FILE: MSMg01no400_b06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTGGTCCATGACGATGAGCAAGACAACTGTGAAGAGACAACAAATGAA
AAGAAGGACCAGTAGAGTCCACGCAGGCTCGCCTGGGTCATGCCAGCCAG
CACACCTGAACTGTTTTTCCCATGGTGATGGAAGAAGAGAATGAGCCACA
GTCATTGTGAAAATGTCAAACGAGGCTTCCGTTTTGCACCTGAAAATCAC
CGAGTCGGTTTTCTTTTCTTCTTCTTTTTTTTTTTTTTTTTGGGTTGGTT
TTAAATTCGTTGAGCAATGGAGCCCTCTGACAACTTGCAAGGCTGAGAAA
GGAAGTTGCTGAGAACAGGGGTGGAGGGGGGGGTGNTCCCCCCTCCNTCT
TTTCTCTTTTTTCCCCCCCCCTTCTCTCTTTTCTCCTTCGCTTTCCGTTC
CCGCCTCTTCCCTTTTCTTCTTCTCCTTCCTTTTTTCTCCTCCTCTCCCG
CTTCTTCCTTTTCCTCTTTCTTCTTCCTTCTTCTCCTCTTTTCTGTCCCC
ATTCCTCTCTCCCCTCTCCTCTTATCCTTTCCTCTCTTTCTCCCCTCCCT
CTCCTCTTTTCCTCTTCTTTCTTTCTATCCTTTTGCCCCCCGTTCTAATT
TTTCTATTCTTCTCTTCTTTCTCCTTTCCACTCCCTTTATCTTATCATTA
CCCCTTCCCTTCTTCCTCTTTTTTCCATCTCCCTATATTTCTTTATTTTC
CCTTCTCCTATCCCTTATTTCTTCCCTTTCCTTCTTCTCCTCTN

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGACATCCAGAAATACACAGAAAAA
CCCTGTCTCAAAAAAATAAAAACAAAACAAAAACAAACAAACAAAAAAAC
TCACTGAGAAAGCAATCAGGAAAACAATCTCACTCACAATAGTGTCAAAG
AAGAAAACATTCGAAGCATAAACCTACCCAAAGACATAAAAGGCCTCTAC
CATAAAAATTATAAAACACTTAAGAACTATATTGAAGACACTAAAAAGTA
AGATTTCCTGTTTGCAAATTGGCAGATTTATTCTGTGAAAACAGCCAACG
GACGGTTAATACTGTTAACTTGACAGGATCTAGAATCACCTAGGAAAGCA
GCCTTTGTCCATGTCTCTATGGACTACCTAGATTGGGTGAGCTGAAGTGG
GAGACCACCTAACCGTAGGCAGCACCATCCTGTGGGCTGCGGTGCTAGAC
TGCATAGAGGATAAAGCAGGTGAGCTCCAGGAGGCATCACTGTGTGCTTC
ATGACTGACACAATGTGGCAGTTGCTGGCACTCCTGTCACCTGGCTTCTG
TAACATGATCAGCTGTGTCCCGTGAATAATAGCCACAGGACTCCCCTCCT
TAACCTGGTTCTGCGAGATGTTTTGCCCCCCTTGAGAAGTTAACCGCACA
ACATGTATGGGAAAAAAAAAATACAAATTCTATTCTTACTATGGAGGGGC
GTAAATAATTCCCATAACCCTGTAAAAGTACACCGGTTTTGTATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_b06.b1 MSMg01no400_b06.b1 CHROMAT_FILE:
MSMg01no400_b06.b1 PHD_FILE: MSMg01no400_b06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:15 2005
         (343 letters)



>mm_chr17_73288512_73289254
          Length = 743

 Score =  609 bits (315), Expect = e-179
 Identities = 336/347 (96%), Gaps = 7/347 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctggtccatgacgatgagcaagacaactgtgaagagacaacaaatgaaaagaa 63
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctggtccaggaggatgagcaagacaactgtgaagagacaacaaatgaaaagaa 263

                                                                       
Query: 64  ggaccagtagagtccacgcaggctcgcctgggtcatgccagccagcacacctgaactgtt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggaccagtagagtccacgcaggctcgcctgggtcatgccagccagcacacctgaactgtt 323

                                                                       
Query: 124 tttcccatggtgatggaagaagagaatgagccacagtcattgtgaaaatgtcaaacgagg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttcccatggtgatggaagaagagaatgagccacagtcattgtgaaaatgtcaaacgagg 383

                                                                       
Query: 184 cttccgttttgcacctgaaaatcaccgagtcggttttcttttcttcttcttttttttttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cttccgttttgcacctgaaaatcaccgagtcggttttcttttcttcttcttttttttttt 443

                                                                       
Query: 244 tttttt-------gggttggttttaaattcgttgagcaatggagccctctgacaacttgc 296
           ||||||       || ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttttttttttttggtttgtttttaaattcgttgagcaatggagccctctgacaacttgc 503

                                                          
Query: 297 aaggctgagaaaggaagttgctgagaacaggggtggaggggggggtg 343
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaggctgagaaaggaagttgctgagaacaggggtggaggggggggtg 550


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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