BAC Information

Click to search

BAC

Clone NameMSMg01-400F21
Chromosome17 (Build37)
Map Location 27,093,500 - 27,240,272
singlet/doubletdoublet
Overlap geneSyngap1, Zbtb9, Bak1, Ggnbp1, Itpr3
Upstream geneD630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta
Downstream gene2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400F21.T7 (MSMg01no400_f21.b1)MSMg01-400F21.TJ (MSMg01no400_f21.g1)
ACCAG500007AG500008
length769797
length of high quality
(start - end)		525 (45 - 569)435 (79 - 513)
definitionCHROMAT_FILE: MSMg01no400_f21.b1 PHD_FILE: MSMg01no400_f21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:39 2005CHROMAT_FILE: MSMg01no400_f21.g1 PHD_FILE: MSMg01no400_f21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,093,500 - 27,094,018)(27,239,838 - 27,240,272)
sequence
NTATCTATATTTGGTGGCGCTATACGACTCACTATATTCAGAGGATCCGC
GGAATTCCTTTCTCTGTTCGCATCCAAGGCTGCTGTAAAAAAAGTCACCG
TGAACTGAGCCAGCCAAAGCTCTTCTCTCACAGATCAGGGGTCTAAAGTC
CAAGATGAGCAAGGCCATGTCAGTTCTGAAAGCTGTCACCTTCAGTCTGT
CCCTCTTTACATGGCTAGCTTCCTTCTGTATGTCTCTAATGTGATAAAGT
CACCAATTGCTGGATTAAGAGATGACATTAATCAAGTATGCCCTCATCTG
AATTGACATCTGCCAGGACACTATTTCTCATATTCTAGAGAGAAATAATT
CGCCACTATTCGAACCCAGTGTACTTACTGCTCTCCTTACGGCCACCATC
TTGATCTCGTGTGCTCACTGTCTTTCTGGTGTGTCTGTCTTCACCCTTTT
ATCTGCCCCAACCACTTCCTCATGCCAGGACAACAGCCGCCGAGTAGATA
ACGTGCTGAAGCTATGGATCATAGAGGCTCGAGAGCTGCCCCCCAAGAAG
AGATATTACTGTGAGCTGTGCCTGGACGACATGCTGTATGCACGAACCAA
CTCCTAGCCCCGCTCGGTTTCATGAGACAACGTCTTTTTGGGGCGAGCAC
TTTGAGTTTACAACCTGCCTGCCGGTCCGGGACCTTCGGCTGCATCTGTA
CCGGGACTCCTAACAATAATGGAATAATGACAAAGGTTGGCTATTTTGGC
CTGGGGGAGCGGTCTAATG

NNNCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGGGAACCAATGCAAGGTGGT
GTCAAAAACCAGCACATTGTGGGCACTTGCTAAATACCAGCCCTGATCAT
CAGGCATCTCACAGGAAGCTGTCAAAGAGACATGATGCCACCGTGAAGAC
ACCCAGTGAGTGAGCCTGTAGGCCACACCTGGTTCAGAATGGTGAGCAAA
GGTCGTGCATAGCTGACCACTCTCAAGCATCGTCCACAGTGCAAGAAATG
AGTCAGGCCAGGAGGGTGGCAAAGGCAGCATATACTAGATCCCTGCCCTG
CCCCACCCCCACCCCCAATAAGAAAGGCCTAAGTGAGGCCCACCATCCCT
GTCAAGCTGTGAGAGACTAGATCCCCGTATGCCCAGGGCTCCAAGCAGGC
CCAAGGCTGTGGGCCCCTCTCACCTGCTTGAAAGTGTGCATGGCTTCCTG
GCGCTGGCTGAAGTGTTTGAAGAGCAGCTGCAGCGCACCGGAGACNAGAG
ATGGGTAGTCGTGCATGGTCAGGTGCAGCAACACTCGCAGGAACATGGGG
GCACCTTCATCGTCCACCTCCAGAATGCTGGTGGGCTTCCTGCCCCCCAG
GGGGGGGGACAAACGAAAAACCTTGTATGAAGGGAGGGTAAATTGGCCCC
CCGGGCTCCCCTGGGGTGGGGAAAACCCTTTGTTCCGGAAAAGTCTCTTT
ATCTCCCAAAACCCCTGATAGAGGGAAACCTCTCTCTTTGGGGTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_f21.b1 MSMg01no400_f21.b1 CHROMAT_FILE:
MSMg01no400_f21.b1 PHD_FILE: MSMg01no400_f21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:39 2005
         (525 letters)



>mm_chr17_27093294_27094218
          Length = 925

 Score =  988 bits (511), Expect = 0.0
 Identities = 517/519 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   ggaattcctttctctgttcgcatccaaggctgctgtaaaaaaagtcaccgtgaactgagc 66
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggaattcctttctctgttagcatccaaggctgctgtaaaaaaagtcaccgtgaactgagc 266

                                                                       
Query: 67  cagccaaagctcttctctcacagatcaggggtctaaagtccaagatgagcaaggccatgt 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cagccaaagctcttctctcacagatcaggggtctaaagtccaagatgagcaaggccatgt 326

                                                                       
Query: 127 cagttctgaaagctgtcaccttcagtctgtccctctttacatggctagcttccttctgta 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cagttctgaaagctgtcaccttcagtctgtccctctttacatggctagcttccttctgta 386

                                                                       
Query: 187 tgtctctaatgtgataaagtcaccaattgctggattaagagatgacattaatcaagtatg 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tgtctctaatgtgataaagtcaccaattgctggattaagagatgacattaatcaagtatg 446

                                                                       
Query: 247 ccctcatctgaattgacatctgccaggacactatttctcatattctagagagaaataatt 306
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 447 ccctcatctgaattgacatctgccaggacactatttctcagattctagagagaaataatt 506

                                                                       
Query: 307 cgccactattcgaacccagtgtacttactgctctccttacggccaccatcttgatctcgt 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 cgccactattcgaacccagtgtacttactgctctccttacggccaccatcttgatctcgt 566

                                                                       
Query: 367 gtgctcactgtctttctggtgtgtctgtcttcacccttttatctgccccaaccacttcct 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gtgctcactgtctttctggtgtgtctgtcttcacccttttatctgccccaaccacttcct 626

                                                                       
Query: 427 catgccaggacaacagccgccgagtagataacgtgctgaagctatggatcatagaggctc 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 catgccaggacaacagccgccgagtagataacgtgctgaagctatggatcatagaggctc 686

                                                  
Query: 487 gagagctgccccccaagaagagatattactgtgagctgt 525
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gagagctgccccccaagaagagatattactgtgagctgt 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no400_f21.g1 MSMg01no400_f21.g1 CHROMAT_FILE:
MSMg01no400_f21.g1 PHD_FILE: MSMg01no400_f21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:39 2005
         (435 letters)



>mm_chr17_27239638_27240472
          Length = 835

 Score =  795 bits (411), Expect = 0.0
 Identities = 429/435 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggggaaccaatgcaaggtggtgtcaaaaaccagcacattgtgggcacttgctaaatacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tggggaaccaatgcaaggtggtgtcaaaaaccagcacattgtgggcacttgctaaatacc 576

                                                                       
Query: 61  agccctgatcatcaggcatctcacaggaagctgtcaaagagacatgatgccaccgtgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 575 agccctgatcatcaggcatctcacaggaagctgtcaaagagacatgatgccacagtgaag 516

                                                                       
Query: 121 acacccagtgagtgagcctgtaggccacacctggttcagaatggtgagcaaaggtcgtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 acacccagtgagtgagcctgtaggccacacctggttcagaatggtgagcaaaggtcgtgc 456

                                                                       
Query: 181 atagctgaccactctcaagcatcgtccacagtgcaagaaatgagtcaggccaggagggtg 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 455 atagctgaccactctcaagcatcgcccacagtgcaagaaatgagtcaggccaggagggtg 396

                                                                       
Query: 241 gcaaaggcagcatatactagatccctgccctgccccacccccacccccaataagaaaggc 300
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gcaaaggcagcagagactagatccctgccctgccccacccccacccccaataagaaaggc 336

                                                                       
Query: 301 ctaagtgaggcccaccatccctgtcaagctgtgagagactagatccccgtatgcccaggg 360
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 335 ctaagtgaggcccaacatccctgtcaagctgtgagagactagatccccgtatgcccgggg 276

                                                                       
Query: 361 ctccaagcaggcccaaggctgtgggcccctctcacctgcttgaaagtgtgcatggcttcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ctccaagcaggcccaaggctgtgggcccctctcacctgcttgaaagtgtgcatggcttcc 216

                          
Query: 421 tggcgctggctgaag 435
           |||||||||||||||
Sbjct: 215 tggcgctggctgaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |