Query= MSMg01no400_i05.b1 MSMg01no400_i05.b1 CHROMAT_FILE:
MSMg01no400_i05.b1 PHD_FILE: MSMg01no400_i05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:51 2005
(604 letters)
>mm_chr17_93479476_93480479
Length = 1004
Score = 996 bits (515), Expect = 0.0
Identities = 542/557 (97%), Gaps = 14/557 (2%)
Strand = Plus / Minus
Query: 1 ttttttatgtaacttcacaaatataaactattcacctaataaaattggtcttagaaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ttttttatgtaacttcacaaatataaactattcacctaataaaattggtcttagaaaaaa 491
Query: 61 aattatggaatgtttcctgctaaaaaatttaggtaacagatatgtgaaaccagcatatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aattatggaatgtttcctgctaaaaaatttaggtaacagatatgtgaaaccagcatatgc 431
Query: 121 tgtaacaaaaacttgaatctttttgatgaacttgaaaattctaattaacatgctcaagat 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 430 tgtaacaaaaacttgaatctttttgataaacttgaaaattctaattaacatgctcaagat 371
Query: 181 tttgaaataatacttaatcatttgaattttaggtttgaatttaaatattgaatcatttca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tttgaaataatacttaatcatttgaattttaggtttgaatttaaatattgaatcatttca 311
Query: 241 atgcaaaatttttt------attaatataggagacattagaacaaaaattttacaacact 294
|||||||| || | |||||||||||||||||||||||||||||||||||||
Sbjct: 310 atgcaaaa----ttcaagaaa--aatataggagacattagaacaaaaattttacaacact 257
Query: 295 aagatatatttgcattgtttattaggaactgttttctgtttttacttttggaaattccag 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aagatatatttgcattgtttattaggaactgttttctgtttttacttttggaaattccag 197
Query: 355 ataaattaaaattttatagccacatcaaaaccagaataaatatttataactagtatgttc 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ataaattaaaattttatagccacatcaaaaccagaataaatatttataactagtatgttc 137
Query: 415 agggttgtcaagtcttaaaaacaacgaaaatttccttcagtcagataa-aaggatacaaa 473
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 136 agggttgtcaagtcttaaaaacaacgaaaatttccttcagtcaga-aagaaggatacaaa 78
Query: 474 aagttcagtatatgtagtatttttgatgtccaaaagaaataactatagagctttgagaac 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 aagttcagtatatgtagtatttttgatgtccaaaagaaataactatagagctttgagaac 18
Query: 534 acaacagtaaacattaa 550
|||||||||||||||||
Sbjct: 17 acaacagtaaacattaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no400_i05.g1 MSMg01no400_i05.g1 CHROMAT_FILE:
MSMg01no400_i05.g1 PHD_FILE: MSMg01no400_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:51 2005
(343 letters)
>mm_chr17_93285432_93286176
Length = 745
Score = 648 bits (335), Expect = 0.0
Identities = 342/345 (99%), Gaps = 2/345 (0%)
Strand = Plus / Plus
Query: 1 aagaaataattaccttctatagagttgcttaaccttagaacctaatagcaatacttggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaaataattaccttctatagagttgcttaaccttagaacctaatagcaatacttggca 260
Query: 61 aaatttaagtatctgtgtgtg--aaatatatgtaagggcagtctaactggtacagtcagc 118
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatttaagtatctgtgtgtgtgaaatatatgtaagggcagtctaactggtacagtcagc 320
Query: 119 tttattcccggatccctgtttacgttttagatctataaatacaaaagatatagttaagtg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttattcccggatccctgtttacgttttagatctataaatacaaaagatatagttaagtg 380
Query: 179 aagatattacattatggctttgcattctttatagtaatacttaaccacaatatctatcac 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagatattacattatggctttgcattctttatagtaatacttaaccacaatatctatcac 440
Query: 239 aaaataccatattatctgctcttgtttattaaatataagaaaataaatactataaggaca 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaataccatattatctgctcttgtttattaaatataagaaaataaatactataaggaca 500
Query: 299 attttccctttggttaattttctattggaattattcattgaactt 343
||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 attttccctttggttaattttctattgtaattattcattgaactt 545
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 745
Length adjustment: 9
Effective length of query: 334
Effective length of database: 736
Effective search space: 245824
Effective search space used: 245824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
