BAC Information

Click to search

BAC

Clone NameMSMg01-401I13
Chromosome17 (Build37)
Map Location 90,888,400 - 90,888,624
singlet/doubletsinglet
Overlap geneNrxn1
Upstream geneLOC100043906
Downstream geneEG668871, LOC668872, LOC627235
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401I13.T7 (MSMg01no401_i13.b1)MSMg01-401I13.TJ (MSMg01no401_i13.g1)
ACCAG500896AG500897
length737746
length of high quality
(start - end)
225 (378 - 602)328 (326 - 653)
definitionCHROMAT_FILE: MSMg01no401_i13.b1 PHD_FILE: MSMg01no401_i13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:11 2005CHROMAT_FILE: MSMg01no401_i13.g1 PHD_FILE: MSMg01no401_i13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAACAATCCGCNG
GAANCNCAATTTGGCAAAACGAATGGCNGAGAAGCACCTAAAAAAAAGTC
AACATCCTTACTCATCAGGCAAATGCTAATCAGAACCCATTTTCTAATGC
CATTAAGAAAAGTCACAGACTCCCTGAAGAGAGGCTTAAGACCATGCACT
TTAGCTGTCAAATACTTGTTCATACTGTTCTTAACACTTTTGCATTTATT
TTAGTAACTGAATAGAACTCAACTTTGCACTCATGTATCTGTCTGACAGA
AGTTCATTACATAAGCTGNATTAAGNAGAAAATGNAAATGATAAAGAAAC
CTACATGTATTTTAAACCACCACTGGTACTTAATATTGTTAAAGACATAC
AGACATGACCACTGTTATGCTTATTCACCTTTCTCCCCAGTGCTGGTGCC
ATGAGCACACCAGGAACAATGTCACATGAAGAACAGAAAACATTCAATTG
ACAATAGTTTAATAAAAAATGGTTTTTACTCATTTAGACAAGATTGTTTT
ATTATTCTTACTTCAAAGGGGCTTTTCTTTTATAATATGTGAAAAATGCA
GACAAGACTGTACTTATTATTAGGGGACTTTCTCTTCAACATACCCTGTT
CTTTTCTATTCCTTGTATAAAATACCTTGAATCTTCAACAACTGACCATT
CTGTAGATTCATTGTCAAAAAGTACTACCTGACAAAG
NCCGATGAAGTGGGAGGCCTGGGGGCCGCCTGTTTCACAAATTTAGGTGA
ACTATAGAAGTTCCGCAGAAATTCCCACCTTTATAATTATTGTTATCAAG
AGCAATGACTCCTGGAGTTGCTACTTGATGCTAAATATATTCAGACATAT
TTGGTCACTGCATTAATTAATTTGCATATTCATGTCATAGGAATGACATC
ACTGCATTACAGTGAAGAACAAGGGTTTGGCTTGAAACACAAGCTACACT
GTTCATTATCTATGTTTTATTCAGTAATCTTCTTAACCTTCCATAAAGTA
GAGAGTAGTTCAAATTANATAANAGAGCTGTTAGCAAGATGGAGGCAATT
AACACAGTCATGCTCTTATGTGGGAATTGCTGGTATTTCTTTCTTTTTAT
TTTTAATTGAATATTTTCTTTATTTACGTTTCAAATGTTTGTCCCTTTCC
AGGTCTCCCCTTCTGAAACAACCTTTCCCATCCCTCATCCTCCTGACTCT
ATGAGGGTGTTCCCTCACCCATCCATCCACTCTCATCTTCCCTCCTTGTC
ATTCCCCTACACCAATACCCTCAGCCATCCAATACTCTCAGGCCCAAGAG
CCACTTCTCCCACTGATGTCCAACGAGGCCATCTTCTGCCACATATGTGG
TCAGCACCATGTGTCCCTTCATGTGTACTCTTTGGGTGGGGGNCCAGTCC
CCAGGAGATCCAGGGGTCTGGCCTGTTGACTATATTGCTCCCTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_i13.b1 MSMg01no401_i13.b1 CHROMAT_FILE:
MSMg01no401_i13.b1 PHD_FILE: MSMg01no401_i13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:11 2005
         (225 letters)



>mm_chr17_90888200_90888824
          Length = 625

 Score =  427 bits (221), Expect = e-124
 Identities = 224/225 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttaatattgttaaagacatacagacatgaccactgttatgcttattcacctttctccc 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 acttaatactgttaaagacatacagacatgaccactgttatgcttattcacctttctccc 366

                                                                       
Query: 61  cagtgctggtgccatgagcacaccaggaacaatgtcacatgaagaacagaaaacattcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 cagtgctggtgccatgagcacaccaggaacaatgtcacatgaagaacagaaaacattcaa 306

                                                                       
Query: 121 ttgacaatagtttaataaaaaatggtttttactcatttagacaagattgttttattattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ttgacaatagtttaataaaaaatggtttttactcatttagacaagattgttttattattc 246

                                                        
Query: 181 ttacttcaaaggggcttttcttttataatatgtgaaaaatgcaga 225
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttacttcaaaggggcttttcttttataatatgtgaaaaatgcaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 625
Length adjustment: 9
Effective length of query: 216
Effective length of database: 616
Effective search space:   133056
Effective search space used:   133056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)