BAC Information

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BAC

Clone NameMSMg01-401O11
Chromosome17 (Build37)
Map Location 11,257,553 - 11,257,803
singlet/doubletsinglet
Overlap genePark2
Upstream geneQk, LOC675815, Pacrg, LOC100041113
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401O11.T7 (MSMg01no401_o11.b1)MSMg01-401O11.TJ (MSMg01no401_o11.g1)
ACCAG501178AG501179
length1,159754
length of high quality
(start - end)
---251 (369 - 619)
definitionCHROMAT_FILE: MSMg01no401_o11.b1 PHD_FILE: MSMg01no401_o11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:38 2005CHROMAT_FILE: MSMg01no401_o11.g1 PHD_FILE: MSMg01no401_o11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAGAAAAAGAGGAGAGGACAGCACGAAAAAAANNNANCATAATTACCCCA
GTCTCGCNNNGNANNNNNNNNNNNNGGTGAACCCNNCACCCCCGCCGGGG
GGNNNNNNNANNGNAGGNNNGAGNGAGGAGAANGAAGAGNAAGGGGAGAG
GGAGCCGCACGCCAGACAGAGCGGGAAGCGAGGAACACGCGGCGAAGACC
GCGGCCCAAGCCAACGGCACGCGCGAGCGGAGACCCAGANCGAGCAACCA
ACGACGCGAGACGGAAAGCGCAGAAAGACCCGCGACAAACCACCCGAAAC
GACGCACGAGGGCGACCAAGCGAAGANCATTTTTTGATGCCAACAAAGGA
ACACGAGAAGGCGCAGGCACACGGACGCGGAGAACGAAACCGAGGAACAA
CCAAGACCAACAACCACCAACAGATTTGCATGAATTTGTGGCAAAACCAA
CGCCAGACGAGAGGGGCAGGAGCCGCAGGAGAAGAGATTGTTTGTAGACG
CTCCACCGCCCCGCGGCCCGGCGAGGGGGGNGACGATAGGAGAGTTGGCC
AAATAAGACCGCACAGAGAAGCGAGCCGCCCACACCGGAGGGACGGGAGT
AAGGAAGAGAACGGAGGCGCAGCGACAGGAGGAGCAGAGAGAAGAGCACG
AGGGCACGACGCATGCAGCAATACAGACGGGAGCGAGGCAGACACCCCAC
GACCCGCCCCCGCCGCGACAGTGCGGCGGCGGCACGGAGAGCGGAAGCAA
GCGGAGGCGCGGCGCGGGGAGAAGATAGGAACGTGCGGACGAGAAGACAG
GAGACGGCGGCGCGCGACGACCACACANAGCGAGTCAACCACAGACACGG
CGCGCGCGGACTGGAGGCGCCGAAGCGGCGCCGCGCTGAGGAGCGGGCGT
GGCGCAGGCGATACGCCGCTCACGCCCACAGCAGCCAGGAGAAAGCGCCG
ATGAGCGACCCCCGGCTGAGACAAGCCGCAGAGAAGCGAGTGTTTCAATG
CCATTGCCGCACGGCAGNGGCGCGAGACGAAGATNGGGCGCCAGCCGGTG
CGCGCATACGCGCAGNCATGACTGACAGAGCGCAACGTCGAGCGNCATAC
TTGTGTGTGGACGCAGGAACCCAATACCGATACACACACCGCGCCACTCG
TTGTCACAC
CCCGATGATGTGGGAGGCCTGGNGGNCGCCTGTTTCCTACCTGGGGTGAA
CTANAGAAGTTTCGNAAACATCGTGAAAAAACTAAATATTAAGAAAACTG
GGCAGTGTGTGACTGTTCCCCTCTGTGTGTGTGTGATTCATTCAACACCT
TTGAAAATCAGATGGCAAAATAAAAATATATTGACAGTGGTCATGTATGC
ATAACATCTGAGATCAAGACTCAAAGACAACCAATCCATCGGGTAAGTCT
TAGGACAGGGGATTACAAGGGACAAAGACATGATCAAATTTTAAATTTTA
CTGGTTTTTCTACTATTGTGATTAGATTTTTTTTTTAAAGACAACGCTAT
GGGTTTGTTGTTCAACGAAGCTGGTGGGAGCTATATTAAAGGTACTATAG
AACTACATTAAAACCCCAAGAGAATCTGTTCTAATGTATTTTTCCAAGGG
TTTAAGTCATGAAAATCCTACTATAAATGCAGGACTTATGAAGAAAATTG
AGGGGAAGAAGGTGAAATAATAATAGTAGCAGAAATGAAATTACAAAAAC
CTGTATAACTGTTCAAATCATGTTTTAGGTGTTATTAAGTGTTTATTGTA
CTATAAAGTCTTAAATTCACTTTGCATAAATTATGAAAATTATATACCAA
TATTATTTTTTTTATAGNAAACCCGCGAAACAAATTGATTTTTACATAAA
ATGAGCAACTTAGCCAATTGAACTCTATCAACTGGAATTCTTATGTAAGC
TTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_o11.g1 MSMg01no401_o11.g1 CHROMAT_FILE:
MSMg01no401_o11.g1 PHD_FILE: MSMg01no401_o11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:38 2005
         (251 letters)



>mm_chr17_11257353_11258003
          Length = 651

 Score =  462 bits (239), Expect = e-135
 Identities = 248/251 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctggtgggagctatattaaaggtactatagaactacattaaaaccccaagagaatctg 60
           |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 451 agctggtgggagctattttaaaggtactatagaactacattaaaatcccaagagaatctg 392

                                                                       
Query: 61  ttctaatgtatttttccaagggtttaagtcatgaaaatcctactataaatgcaggactta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ttctaatgtatttttccaagggtttaagtcatgaaaatcctactataaatgcaggactta 332

                                                                       
Query: 121 tgaagaaaattgaggggaagaaggtgaaataataatagtagcagaaatgaaattacaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tgaagaaaattgaggggaagaaggtgaaataataatagtagcagaaatgaaattacaaaa 272

                                                                       
Query: 181 acctgtataactgttcaaatcatgttttaggtgttattaagtgtttattgtactataaag 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 atctgtataactgttcaaatcatgttttaggtgttattaagtgtttattgtactataaag 212

                      
Query: 241 tcttaaattca 251
           |||||||||||
Sbjct: 211 tcttaaattca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)