Query= MSMg01no403_l19.b1 MSMg01no403_l19.b1 CHROMAT_FILE:
MSMg01no403_l19.b1 PHD_FILE: MSMg01no403_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:08 2005
(631 letters)
>mm_chr17_9864563_9865593
Length = 1031
Score = 1081 bits (559), Expect = 0.0
Identities = 605/637 (94%), Gaps = 28/637 (4%)
Strand = Plus / Plus
Query: 5 gaattcagtgagttaacattctctcctaatgaccaacaataactacaacaactacaacaa 64
||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 213 gaattcagtgagttaacattctctcctaatgaccaacaa---------caactacaacaa 263
Query: 65 caacaacaacaacaacagcaaaaagtactttggttcatagggagaaagaactaaaaacaa 124
|||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caacaaca---------gcaaaaagtactttggttcatagggagaaagaactaaaaacaa 314
Query: 125 agcccaacatcccttcccctggtgctcccatggctaaggccaagcaggtgtttcacaggc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 agcccaacatcccttcccctggtgctcccatggctaaggccaagcaggtgtttcacaggc 374
Query: 185 catattctccctgagccccctgcactctccatctctgcatacc----------cgctcat 234
|||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 375 catattctccctgagccccctgcactctccttctctgcatacctgaggtaacccgctcat 434
Query: 235 ctttaactggagctatggccctgttatgttcatttttaagtcactctcgtcttacagctt 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ctttaactggagctatggccctgttatgttcatttttaagtcactctcgtcttacagctt 494
Query: 295 gagaatctggaacattccaaacaagctagcaacatcatctcgtctaaaatttccaagcga 354
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 495 gagaatctggaacattccaaacaagctagcaacatcatctcatctaaaatttccaagcga 554
Query: 355 taagctgaaggcatttagtatgttgttttagccggttgtgtgtgtgtgtgtgtgtgtgtt 414
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 taagctgaaggcatttagtatgttgttttagccggttgtgtgtgtgtgtgtgtgtgtgtg 614
Query: 415 tttttaaagaagggaaaatgactgcaaggagacaattacagtcaaattaaggaagacagg 474
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tgtttaaagaagggaaaatgactgcaaggagacaattacagtcaaattaaggaagacagg 674
Query: 475 tattatattatttaaatgtgcaatttaaaaccacatattgagagttatggtccattaatg 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tattatattatttaaatgtgcaatttaaaaccacatattgagagttatggtccattaatg 734
Query: 535 taaattatttcacagtgaaaaatatctaattatctcttccagataagaaatataaatgta 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 taaattatttcacagtgaaaaatatctaattatctcttccagataagaaatataaatgta 794
Query: 595 aatgcttcaacctagtcataataacctgcaggacgag 631
|||||||||||||||||||||||||||||||||||||
Sbjct: 795 aatgcttcaacctagtcataataacctgcaggacgag 831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no403_l19.g1 MSMg01no403_l19.g1 CHROMAT_FILE:
MSMg01no403_l19.g1 PHD_FILE: MSMg01no403_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:08 2005
(604 letters)
>mm_chr17_9879444_9880447
Length = 1004
Score = 1145 bits (592), Expect = 0.0
Identities = 601/604 (99%)
Strand = Plus / Minus
Query: 1 ttaacaaaggatctctttgagcgtatctctttgatcccagttgactgcttactttacaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttaacaaaggatctctttgagcgtatctctttgatcccagttgactgcttactttacaac 745
Query: 61 tgggggcatggctgccaatcaagctaatgcttagagaagaccctgtagaacccattctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tgggggcatggctgccaatcaagctaatgcttagagaagaccctgtagaacccattctgc 685
Query: 121 ccattctgtaggttgttgggagagtaattcttcctagtgactcttccggctgaccttcca 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 684 ccattctgtaggttgttgggagggtaattcttcctagtgactcttccggctgaccttcca 625
Query: 181 acgttgctcagtatatttgggcactggtatgaagcaacaggctctagagtcattagggac 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 624 acgttgctcagtatatttgggcactggtatgacgcaacaggctctagagtcattagggac 565
Query: 241 catgaagagaatgtaaaaatacgtgcataattaaggctaaatcctgtatatagaaatatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 catgaagagaatgtaaaaatacgtgcataattaaggctaaatcctgtatatagaaatatc 505
Query: 301 caattatttccacaggcacctgcttaaattcttttataaaggctaaaagcagattgaatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caattatttccacaggcacctgcttaaattcttttataaaggctaaaagcagattgaatt 445
Query: 361 atttgaatatcggtgttggacatcattcggtagacacgagaacacagccccagattggca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 444 atttgaatatcggtgttggacatcattcggtagacacgagaacacagccccagatcggca 385
Query: 421 tgattgaaaaaagtaaagaaaacctttgtttagagatgtttaaattttcacactttcagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgattgaaaaaagtaaagaaaacctttgtttagagatgtttaaattttcacactttcagc 325
Query: 481 taaatgaattctttctcaaggttttctatgagagactgtgacatctatgtctattaaagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taaatgaattctttctcaaggttttctatgagagactgtgacatctatgtctattaaagg 265
Query: 541 acccccggagatggcaataaatacttagtacggtcatgtgtgcattcaaattacatattg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acccccggagatggcaataaatacttagtacggtcatgtgtgcattcaaattacatattg 205
Query: 601 tgaa 604
||||
Sbjct: 204 tgaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
