BAC Information

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BAC

Clone NameMSMg01-403N15
Chromosome17 (Build37)
Map Location 36,842,723 - 36,843,258
singlet/doubletsinglet
Overlap geneLOC667912
Upstream geneLOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1
Downstream geneLOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403N15.T7 (MSMg01no403_n15.b1)MSMg01-403N15.TJ (MSMg01no403_n15.g1)
ACCAG502664AG502665
length754754
length of high quality
(start - end)
543 (41 - 583)436 (65 - 500)
definitionCHROMAT_FILE: MSMg01no403_n15.b1 PHD_FILE: MSMg01no403_n15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:17 2005CHROMAT_FILE: MSMg01no403_n15.g1 PHD_FILE: MSMg01no403_n15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:17 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGGCATACCCTAAACCTATATCAAGAGGTCCTGCCCTGGAAAAAACCTGC
ACCAAAGCTGGTCCTAAGACCTGAGACTGCTGCCTCCACCAGTGCTCCCC
CAGCAGAGGTCTCCAGCCTTGGGATTTTTTAAAAAATTGCACAGAGCCTT
TAGATCTGCTCTGGTCAATGATGCTAAAAACCTTACAGATTTTGAAAGGC
TCCCAGCCAGATCTAACCACCTCCAGCTGGCTGTAGTATAATGCCAGATC
CTCCTTTTATGAATGTCTTGGATTTATATCTAAATATAGTGTCTGAGAGA
GACACTGCATGCAGATGATCCCAAGAAGGCCCAGCCTAACCCAGCAGACA
ATATCAGGACAGGGGACCTACCTGGGAAAAGTTCCCTTGTCATATCAGCA
TCTTTGTAAGCAAACAATCCCCACAGTTCATTCCAAATGGGTTATTCCAC
CTGAACAGGCTTTGTGGGGCTGTTCAACGGGGTTGACTCTGTGTGTACAG
AGAGAGGTCCTTAATTCCCCTACTGTGAGGAGCTCTGTATTCTAGCACAG
TTGGTGCCAGGCATAACCTATTATTCAGAGGAAACAGTGCTGAAGAATCT
AATAAGACATGTTGGGGGAGACCCATGACGCCGAATAGAGAACCTATTTT
TCTAATTTTGGCTGTAATTTTGAGAGCAGGGCTAACCGTGCCACGTCTTG
CGAA
ATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTGTCACGAAAAATTCTCACCTGAGGAATACCGAATGGCTGAGAAACA
CCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAA
CAACCCTGAGATTCCATCTCACACCAGTCAGAATGGTTAAGATCAAAAAT
TCAGGTGACAGCAGATGCTGGCGAGAATGTGGAGAAAGAGGAACACTCCT
CCACTGTTGGTGGGATTGCAAACTTGTACAACCACTCTGGAAATCAGTCT
GGCAGTTTCTTTTATTATTGGACATAGTACTACTGGAGGACCCCGCAATA
CCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTAGTAAGAAAGAAAC
ATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGA
AAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAAAATTGAGGGGGC
ATTCTGGCGCGTAGCGCATCAGTAGCGGCCGCATTTAGCGGGTCGGTTGC
GGAGCGCCGTTGTAGCTGTTTTTTTTCCCCCCCGTATCCCTTTTTCCTTT
GACGTTGTTCTTCCCCTTTCGCTTGTCCCTTCTCCCTTTTTGATTTTTCT
TTTTGCTCCCTCCCCTTTGTTCTTTCCCCGCCTTCCCTCCCATCCTTCTC
CTCCCTTTTCTCCCTCCTCATTCCCCACTTTTCTCTCTCTTTCCCCTTCC
TCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_n15.b1 MSMg01no403_n15.b1 CHROMAT_FILE:
MSMg01no403_n15.b1 PHD_FILE: MSMg01no403_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:17 2005
         (543 letters)



>mm_chr17_36842519_36843459
          Length = 941

 Score =  948 bits (490), Expect = 0.0
 Identities = 527/540 (97%), Gaps = 6/540 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctggcataccctaaacctatatcaagaggtcctgccctggaaaaaacctgcacca 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gaattctggcaaaccctaaacctatatcaagaggtcctgccctggaaaaaacctgcacca 681

                                                                       
Query: 65  aagctggtcctaagacctgagactgctgcctcc-accagtgctcccccagcagagg-tct 122
           ||||||||||| |||||||||||||||||| || |||||||| ||| |||||| || |||
Sbjct: 680 aagctggtcctcagacctgagactgctgcc-ccaaccagtgcacccacagcag-ggttct 623

                                                                       
Query: 123 ccagccttgggattttttaaaaaattgcacagagcctttagatctgctctggtcaatgat 182
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ccagccttgggattttt--aaaaattgcacagagcctttagatctgctctggtcaatgat 565

                                                                       
Query: 183 gctaaaaaccttacagattttgaaaggctcccagccagatctaaccacctccagctggct 242
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 564 gctaaaaaccttacagattttgaaaggctcccagccagatctaaccacctccagctagct 505

                                                                       
Query: 243 gtagtataatgccagatcctccttttatgaatgtcttggatttatatctaaatatagtgt 302
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 504 gtagtataatgccagatcctccttttatgaaggtcttggatttatatctaaatatagtgt 445

                                                                       
Query: 303 ctgagagagacactgcatgcagatgatcccaagaaggcccagcctaacccagcagacaat 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgagagagacactgcatgcagatgatcccaagaaggcccagcctaacccagcagacaat 385

                                                                       
Query: 363 atcaggacaggggacctacctgggaaaagttcccttgtcatatcagcatctttgtaagca 422
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 384 atcaggacaggggacctacctgggaaaagttcccttgtcatatcagcatctttgtatgca 325

                                                                       
Query: 423 aacaatccccacagttcattccaaatgggttattccacctgaacaggctttgtggggctg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aacaatccccacagttcattccaaatgggttattccacctgaacaggctttgtggggctg 265

                                                                       
Query: 483 ttcaacggggttgactctgtgtgtacagagagaggtccttaattcccctactgtgaggag 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttcaacggggttgactctgtgtgtacagagagaggtccttaattcccctactgtgaggag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 941
Length adjustment: 10
Effective length of query: 533
Effective length of database: 931
Effective search space:   496223
Effective search space used:   496223
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)