BAC Information

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BAC

Clone NameMSMg01-403O12
Chromosome17 (Build37)
Map Location 50,435,043 - 50,435,514
singlet/doubletsinglet
Overlap genenone
Upstream geneMocs1, Daam2, Kif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl
Downstream genePlcl2, EG654432, Tbc1d5, LOC100043451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403O12.T7 (MSMg01no403_o12.b1)MSMg01-403O12.TJ (MSMg01no403_o12.g1)
ACCAG502706AG502707
length752751
length of high quality
(start - end)
474 (63 - 536)241 (72 - 312)
definitionCHROMAT_FILE: MSMg01no403_o12.b1 PHD_FILE: MSMg01no403_o12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:22 2005CHROMAT_FILE: MSMg01no403_o12.g1 PHD_FILE: MSMg01no403_o12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXATTCGNAAAGGATCCGCGGAATTC
TCTCTTACACCAGGCTGGCCTCGAACTTACAGAGACCCACTTGCCTCTGC
CTGAGGGCCCAGCACTCTCTGCTCTTTTACTGCTTTAATCGGGGCTGGAG
AGATGGCTCAGCAGTTAAGAGCACTGACTGCTCTTCCGAAGGTTCTGAGT
TCAAATCCCAGCAACCACATGGTGGCTTACAACCATCCTTAATGACATCT
GACTCCCTCTCCTGGTGTGTCTGAAGACAGCTACAGTGTACTTACATATA
AAATAAATAATTTATTAAGTCTTTAAAAAAAACCATACACTTTAAATAGA
AAGCTAATAAATATGTTCCCTCTTAAAATAATTCAAAGGCCTCAGGATGA
TTTTATTAGTAAACTCCCCTCCCAGTTTAAACTGGCTGGTTTTCAGGTTC
CTTCTGTTAGCCTCCTGTAAGTCAGCTGTCGTGGNCACACAGAGAAACAT
TGTGATCCCCATTTTACCTCCTGCTCTCCTGGCTCCCTCCCAGTTTAGTT
CTCTTATTCCATTTCCCCTTTTTCTCTCCATCACAATACACCATATTCCC
CCTTTCCTGTATGATCACATTCTCCACCATGGACTTACTAAGGACTTTAC
CCGTGTGCGTATCTGGATTGTACGACCCCTTATTCGACAATTTGGCCCCC
CACTAAAGTTTCCCTTCCTTCTCTCTTAGATAAACCGGCGTTTTCTTTTC
AG
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAATAGCAATAGTTTTCTGATGCTTGTGCA
AGCTGGTCACATCACATTTGTCATCATTAGTTTGTCAACTTGCCAACACC
TCGAATCACTGGGAGAGTCTCTGTAAGGGACTCCAGATCAGGTTATGCTG
TAGGTTATCTGCAGGAGAGTGTTTTGATTATTAATTGTTGTGGGAGGTCT
GGCCCACTGTGGGTGGCATCATTCCCTAGGCAGGGGATCCTAGACAGGGA
ATTGATGCAGATCTATGTAGGCACATTGCTTACTGGCTTGCTCATCTTGA
ATTCTCAATTTCCTTTTTATAATCACCCAGAAACACCTGCCCAGGAATGG
TACCACCCATAGTAATCTGGGCCCTTCTACATCAATCATTAGCCAAGAAT
ATGCCCCCACAAACATGGCCTCAGGCCAATCTGATGGAGGCAGTCCTTCA
CATAAGTTCCCTCTTCCTCTGCGATTCTATCTCATCCCTAGTTTCCCCCA
ATCTATTTAGTCAAGGCTCCTATCGCACCTCGCCCTTCCTGTTCTCTGTC
AATTTCCGGCCCCCCTTTCTTCTTTATTCCTTACCCTTTCCTTTTCCTTT
TTTTTTCCCATTCACCTCCCCTCTCCTCCCTCCCTTATTTTTTCGTTCCC
CCTTCTTTTCTTCCCTCCTCCCTTCCTTCCTTTCTTTTCTTTTTTTTTTT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_o12.b1 MSMg01no403_o12.b1 CHROMAT_FILE:
MSMg01no403_o12.b1 PHD_FILE: MSMg01no403_o12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:22 2005
         (474 letters)



>mm_chr17_50434842_50435714
          Length = 873

 Score =  849 bits (439), Expect = 0.0
 Identities = 465/474 (98%), Gaps = 2/474 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggctggcctcgaacttacagagacccacttgcctctgcctgagggcccagcactctctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 202 ggctggcctcgaacttacagagacccacttgcctctgcctgagggcccagcactctccgc 261

                                                                       
Query: 61  tcttttactgctttaatcggggctggagagatggctcagcagttaagagcactgactgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tcttttactgctttaatcggggctggagagatggctcagcagttaagagcactgactgct 321

                                                                       
Query: 121 cttccgaaggttctgagttcaaatcccagcaaccacatggtggcttacaaccatccttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cttccgaaggttctgagttcaaatcccagcaaccacatggtggcttacaaccatccttaa 381

                                                                       
Query: 181 tgacatctgactccctctcctggtgtgtctgaagacagctacagtgtacttacatataaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgacatctgactccctctcctggtgtgtctgaagacagctacagtgtacttacatataaa 441

                                                                       
Query: 241 ataaataatttattaagtctttaaaaaaaaccatacactttaaatagaaagctaataaat 300
           |||||||||  || ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ataaataataaataaagtctt-aaaaaaaaccatacactttaaatagaaagctaataaat 500

                                                                       
Query: 301 atgttccctcttaaaataattcaaaggcctcaggatgattttattagtaaactcccctcc 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgttccctcttaaa-taattcaaaggcctcaggatgattttattagtaaactcccctcc 559

                                                                       
Query: 361 cagtttaaactggctggttttcaggttccttctgttagcctcctgtaagtcagctgtcgt 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 560 cagtttaaactggctggttttcaggttccttctgttagcctcctgtaagtcagccgttgt 619

                                                                 
Query: 421 ggncacacagagaaacattgtgatccccattttacctcctgctctcctggctcc 474
           || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ggccacacagagaaacattgtgatccccattttacctcctgctctcctggctcc 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 873
Length adjustment: 10
Effective length of query: 464
Effective length of database: 863
Effective search space:   400432
Effective search space used:   400432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)