BAC Information

Click to search

BAC

Clone NameMSMg01-404J24
Chromosome17 (Build37)
Map Location 47,480,257 - 47,480,652
singlet/doubletsinglet
Overlap geneTrerf1
Upstream geneBC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110
Downstream geneMrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419, Trem1, Trem3, Treml4, Treml2, B430306N03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404J24.T7 (MSMg01no404_j24.b1)MSMg01-404J24.TJ (MSMg01no404_j24.g1)
ACCAG503248AG503249
length782788
length of high quality
(start - end)		402 (64 - 465)291 (65 - 355)
definitionCHROMAT_FILE: MSMg01no404_j24.b1 PHD_FILE: MSMg01no404_j24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:22 2005CHROMAT_FILE: MSMg01no404_j24.g1 PHD_FILE: MSMg01no404_j24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCATAG
TCTATTCTCCATTGTATGTGAAATTCCACACACATCCAAATTAGAATATA
TCCTGTGAGTAGTAAGGTCAGAGAAGAAAACAGACAGCATTTAACATCTT
GACTGTTGATATCTACATATACTGCTGTTTAAACATTAAGAAAAGAAAAT
TGGGATTTTTAATTTTTTTTTATTTTTTGGCTTCCCTAGTTCCTCCTCTG
CCTTGCAAGGGGTCTTTCTGTGTCTGCCGCATGTGTGTGTTTCCTTATCC
CCAATAAATGCATCCTCCTCTCCCCCCTCAAAAAAAAAACTGCTAAAAAA
TTATGTTATGGGCATGGATGTTTTGCTTGTATGTATGTATGCATGTATGT
GCACCATAGTTTGTGCCTGATGCTTGAGGCGGCCAGAAGAGGGCGCTGGA
TCAATTTGGACTGGAGATACAGACAACTGTGAACCATCATGGCGTTGAAG
GAAACCAAACCCAAATCCTATGCAAGAGCAGACCGTGCTCCTTAACCTTA
AACAAGTCTTTCACCTCCAAACATTGGTGGGCCAAATTGGGGCAAATAAA
ATATTTTTTGTTTAGACAAACCCTGTTTACCCCTCAATGNNNNNNNCTTT
TTCTCCCTTTTATTATATATTTTTCAACCCCTTTATTTCTTCAAACATTT
TTTTTTCCCTACCTTCCACCCACAAGTTTAAAATCTTTAATCTCTTTATT
CATAGCCTTCCCCTTCTCTATTTCTTTTTCTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGTGAGAAAGCTGAGAGGGCGGTGTGGGTGTTAGGA
CTTACCACTGCAGTGACCCTAGTCCTCCAAAGATTTAAGCACCTGTGAAC
AGCATGTATTTATCTATTTGTTTTTTATGTGTATGGGTGTTTGCCCAGGT
GTATTTCTGTGAACCACATACAATCAGTGCCCCCTTGGAGGGCAGAATAG
GTTGTTGGGTATCCTAAAACGGGAGCTACAGATGACTGTGGGAATTGAAC
TCTGGAAGAGCAGCTATTTTTTTTAACTGCTGGGCCACCTTTCCAGCCCC
ACCCTGGACAGAAAGTTGCTTTTTTGTTGTTGTTGTTTGTTTCAAGACAG
GGTTTCCCCGCCCCCTCCTGTCTGTCCTGAAACTCACTCCTGTACACAGT
ATGGCCTCCTACTTTATAATCCACCTGCCTCTGCCTCCCTAGTGTTGTTG
ATCAAAGTCGTGAGTTCCCGCTGCCTTGTTCACCTTTATCCTTTTTTAAT
ACTCCCTTTAGTTGGTCTCTCCCCTTATTATTTCTTTATTCTCCCGCCAA
CATTCCCTTTCACCCCCCATTTTTACCTCTTTATTCCCACGCCCCTTCCC
CCCCCTCGTATTTCTTATATTTGTTCCTTTTTCGTTTTTTCTTCCTTATT
ATAACATTCTCTCTCCGTTCGCCCTCTAATTCTTATTTATATTCACTCTC
TTTTATATCTATTATTATATATTCTCCCCTTCTCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_j24.b1 MSMg01no404_j24.b1 CHROMAT_FILE:
MSMg01no404_j24.b1 PHD_FILE: MSMg01no404_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:22 2005
         (402 letters)



>mm_chr17_47480018_47480819
          Length = 802

 Score =  638 bits (330), Expect = 0.0
 Identities = 382/402 (95%), Gaps = 6/402 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtatgtgaaattccacacacatccaaattagaatatatcctgtgagtagtaaggtcagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 635 gtatgtgaaattccacacacatccaaattagaatatatcctgtgagtggtaaggtcagag 576

                                                                       
Query: 61  aagaaaacagacagcatttaacatcttgactgttgatatctacatatactgctgtttaaa 120
           |||   |||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 575 aag---acagacagcatttaacatctagactgttgatatccacatatactgctgtttaaa 519

                                                                       
Query: 121 cattaagaaaagaaaattgggatttttaatttttttttattttttggcttccctagttcc 180
           ||| ||||||||||||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct: 518 catcaagaaaagaaaattggggttttaaaattttttttattttttggcttccctagttcc 459

                                                                       
Query: 181 tcctctgccttgcaaggggtctttctgtgtctgccgcatgtgtgtgtttccttatcccca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 458 tcctctgccttgcaaggggtctttctgtgtctgccgcatgtgtgtgtttccttatctcca 399

                                                                       
Query: 241 ataaatgcatcctcctctcccccctcaaaaaaaaaactgctaaaaaattatgttatgggc 300
           ||||||||||||||| |||||||||||||||||   |||||| |||||||||||||||||
Sbjct: 398 ataaatgcatcctccactcccccctcaaaaaaa---ctgctataaaattatgttatgggc 342

                                                                       
Query: 301 atggatgttttgcttgtatgtatgtatgcatgtatgtgcaccatagtttgtgcctgatgc 360
           ||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 341 atgaatgttttgcttgtatgtatgcaggcatgtatgtgcaccatagtttgtgcctgatgc 282

                                                     
Query: 361 ttgaggcggccagaagagggcgctggatcaatttggactgga 402
           |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 281 ttgaggtggccagaagagggcgctggatcaatttggactgga 240


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |