Query= MSMg01no404_k24.b1 MSMg01no404_k24.b1 CHROMAT_FILE:
MSMg01no404_k24.b1 PHD_FILE: MSMg01no404_k24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:27 2005
(429 letters)
>mm_chr17_12522801_12523632
Length = 832
Score = 772 bits (399), Expect = 0.0
Identities = 420/429 (97%), Gaps = 7/429 (1%)
Strand = Plus / Plus
Query: 5 gaattcactttatgatccc-agcttctgtcacactcatagcaatcctcctgcctcagcct 63
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactttatga-cccaagcttctgtcacactcatagcaatcctcctgcctcagcct 263
Query: 64 cctgagtgctggctttacaagtgtgtgcaaccaggcctgtctttgtatatgttttgagtt 123
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 264 cctgagtgctggctttacaagtgtgtgcaaccaggcctgtctttgtacatgttttgagtt 323
Query: 124 gagtaagacatggaaggaatgtcttgaatcttagaaacctggtatgtaaatgctctgtgc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gagtaagacatggaaggaatgtcttgaatcttagaaacctggtatgtaaatgctctgtgc 383
Query: 184 agaccactgtttacaggatcagccatgttgaacatacagctatttaacctacatccctaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agaccactgtttacaggatcagccatgttgaacatacagctatttaacctacatccctaa 443
Query: 244 ggggtcagtttctccggagtggagcagcctcagactagcccaggc----ataagcatagc 299
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 444 ggggtcagtttctccggagtggagcagcctcagactagcccaggcttctataagcatagc 503
Query: 300 ctaatggatgacttgcagagatggtgacttcctgctgtacccatggccagtgtgtgacac 359
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 504 ctaatggatgacttgcagagatggtgactccctgctgtacccatggccagtgtgtgacac 563
Query: 360 cttagggctgagaacaacaaccatcagcccaagatggaagccttttttggggggggtagg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 564 cttagggctgagaacaacaaccatcagcccaagatggaagccttttttggggggg-tagg 622
Query: 420 ggggaaagg 428
|||||||||
Sbjct: 623 ggggaaagg 631
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 832
Length adjustment: 9
Effective length of query: 420
Effective length of database: 823
Effective search space: 345660
Effective search space used: 345660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_k24.g1 MSMg01no404_k24.g1 CHROMAT_FILE:
MSMg01no404_k24.g1 PHD_FILE: MSMg01no404_k24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:27 2005
(485 letters)
>mm_chr17_12696897_12697781
Length = 885
Score = 779 bits (403), Expect = 0.0
Identities = 451/485 (92%), Gaps = 28/485 (5%)
Strand = Plus / Minus
Query: 1 cagggagttaagttggaagctgactgtcaattgtaggcctattccaagccacctccccta 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 503 cagggagttaagttggaagctgactgtcaattgtaggcctgttccaagccacctccccta 444
Query: 61 cactaggggatttcctgcctatgctgaaccctgccaatgtagacctctctgcctggcctg 120
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cgctgggggatttcctgcctatgctgaaccctgccaatgtagacctctctgcctggcctg 384
Query: 121 ggtttcaacctcatctccttattagacacggggcagaatcaaacctgacagagtgcagac 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 383 ggtttcaacctcatctccttattagacatggggcagaatcaaacctgacagagtgcagac 324
Query: 181 attgagtcggggcccttacccactggatgctttacctttaagattgatggagggattttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 attgagtcggggcccttacccactggatgctttacctttaagattgatggagggattttt 264
Query: 241 ttgaatccttgctagcatcaggaaggaacaagaccatctctctacatcagggcttctcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttgaatccttgctagcatcaggaaggaacaagaccatctctctacatcagggcttctcca 204
Query: 301 tcacttttcttctaaaataaaaggaaggtcagtgtgagggatgtgggcgatctgttgaag 360
|||||||||||||||||||| |||||||||||
Sbjct: 203 ----------------------------tcagtgtgagggatgtgggcaatctgttgaag 172
Query: 361 agagtgctgactgctctgttcttaggctgcctcctcttcctccaagtgcctgctgtgatt 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 agagtgctgactgctctgatcttaggctgcctcctcttcctccaagtgcctgctgtgatt 112
Query: 421 cctgtatgcttgtcttaggatacaggtcaactaggtagggccctcctacctacaccccac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 cctgtatgcttgtcttaggatacaggtcaactaggtagggccctcctacctacaccccac 52
Query: 481 agtgc 485
|||||
Sbjct: 51 agtgc 47
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
