BAC Information

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BAC

Clone NameMSMg01-404O03
Chromosome17 (Build37)
Map Location 79,130,067 - 79,130,307
singlet/doubletsinglet
Overlap geneStrn
Upstream geneLOC668795, LOC383275, Crim1, Fez2, LOC100043888, Hdac1-ps, Vit
Downstream geneHeatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404O03.T7 (MSMg01no404_o03.b1)MSMg01-404O03.TJ (MSMg01no404_o03.g1)
ACCAG503444AG503445
length742766
length of high quality
(start - end)
132 (64 - 195)241 (63 - 303)
definitionCHROMAT_FILE: MSMg01no404_o03.b1 PHD_FILE: MSMg01no404_o03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:42 2005CHROMAT_FILE: MSMg01no404_o03.g1 PHD_FILE: MSMg01no404_o03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGGCCGCTAAACGACTCCTCATCGAACTCGCCGCGGAATTCAAACGT
TACAATACAAAGAAGGCTGGGAGCAGGCGTGCATCGGAGCCTGGGGACCA
TTGTGTTATCTGTGGTGGCCATCGATCACACCAGACACTGCTTGTTTTTC
TCAATCTACAGAACCCATCTTTATGGAAGGTGCCATATGTACATCACAAA
TATATTTGATGTATTTTCATCCAATCCTCCTCCCACTCTTTCCCCTCCCA
TCACTGTATAAGACGAGGCTCTTCTATACAGTCCCTTGCTCTGCATAATG
ACACATTTTTTTTTATACTTATAAAGAGCTTCAGGCCCTATAAACTGCTA
TCCTACACTCAGCTATACTAAAACCGGTCTTAATCTACTTCCCAGATATG
TGACCTATACTTGTCATCTTATCTTCTCCCTGGCACCTCCTTCTATGTTC
TATTGATAATTCTCAGGTCCTCAGACTTCTTGTTTTTTCCCCCTCATCTT
TGTTCCTCAGACTTCCTGCCCATCTCTATTTTTGATCTATCAATTGGATG
TTTTTATCACCTACTTACCTATTCATCACTGTTTTTTTCCTCTTTGTTCT
ACCACTTATCTTTTCCTATTATATATCTTTTCCAATTTTTTTTTGTTCTC
GCATTTCACACCCCCTCCCTTCCCTTTTTTCTTATTCCCCTTCTTCTCCC
CCCCTTTTAATTTTTCCTTTCCCACTTTTTTCTCTCTTCTTT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTAACGGAGACACTGCGGCTGAGTTCAGCTTTGTGGTAG
AGGGTGTGCTTAGCATGTGCCAAGCCCTGGGTTGAATCTGTAGGAAGAGG
ACAAAAGAGGAGGAGGGAGAGGTGGCAGAGGAGGTAAAGAACCTGAAAAG
ACTTTTAAAAAAGAAAAGCCTGTCAAAACACCTGGAGACAAAAGTGACAG
AGCTTATCCAAAGCCTACTTCAATCCTGGTCATTTAACCTCTCTGTGACT
TAAAAAGTTTGTTGTTAACTTCCAAAGTTCATTCCCCCTCATAGATGGCT
CTGTCATTATAGATTTCAGTCAGCAGGAGGTGATTCACATGATAATATGT
TACCGCCCAACATTACCATGTTAGTTATCCTCCGAAAGAACAATGGAAAT
TACCTTACATTATATCTCATATTTATAACAAGCCATCCTCTATATTGAAT
GTCTTCAGATGTTTGATTCTGCTTAACTTTATACACTCTGTGTCTTATAT
AGTGACTGTATCTATTATTCCCTTTCCTCATCTTTTTTCCCTCCCCTTTT
TTTATTTCTATTATTTCTCCCCCCCCTTTTATTTTCCCCCTCTGTCTTAA
TCTCTTGCTTTTCGTCTTTTATCTTCAATTTTTTTTTGATTTTCCCACTC
CTTTGTTTTCGTTCTGTGTTCCTTTCTCTTCTTTTATCCCCCCTCTTTTT
CTTTCTTTTTTATTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_o03.g1 MSMg01no404_o03.g1 CHROMAT_FILE:
MSMg01no404_o03.g1 PHD_FILE: MSMg01no404_o03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:42 2005
         (241 letters)



>mm_chr17_79129867_79130507
          Length = 641

 Score =  466 bits (241), Expect = e-136
 Identities = 241/241 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taacggagacactgcggctgagttcagctttgtggtagagggtgtgcttagcatgtgcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taacggagacactgcggctgagttcagctttgtggtagagggtgtgcttagcatgtgcca 260

                                                                       
Query: 61  agccctgggttgaatctgtaggaagaggacaaaagaggaggagggagaggtggcagagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agccctgggttgaatctgtaggaagaggacaaaagaggaggagggagaggtggcagagga 320

                                                                       
Query: 121 ggtaaagaacctgaaaagacttttaaaaaagaaaagcctgtcaaaacacctggagacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtaaagaacctgaaaagacttttaaaaaagaaaagcctgtcaaaacacctggagacaaa 380

                                                                       
Query: 181 agtgacagagcttatccaaagcctacttcaatcctggtcatttaacctctctgtgactta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgacagagcttatccaaagcctacttcaatcctggtcatttaacctctctgtgactta 440

            
Query: 241 a 241
           |
Sbjct: 441 a 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)