BAC Information

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BAC

Clone NameMSMg01-405F01
Chromosome17 (Build37)
Map Location 69,881,951 - 69,882,340
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622645, Epb4.1l3, 2410021H03Rik, Zfp161, C030034I22Rik, A930029G22Rik, A330050F15Rik, LOC100043623
Downstream geneLOC668720, LOC673535, LOC100043630, LOC623112, LOC623143, Dlgap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405F01.T7 (MSMg01no405_f01.b1)MSMg01-405F01.TJ (MSMg01no405_f01.g1)
ACCAG503775AG503776
length766774
length of high quality
(start - end)
525 (51 - 575)389 (80 - 468)
definitionCHROMAT_FILE: MSMg01no405_f01.b1 PHD_FILE: MSMg01no405_f01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:16 2005CHROMAT_FILE: MSMg01no405_f01.g1 PHD_FILE: MSMg01no405_f01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTCTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTGTTCACGTTCTGAGCCCCATTTTTTAATGGGGTTATT
TGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTA
GTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGT
GGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAG
TTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTG
CTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTC
CCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTC
CTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGA
TTCGCATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTG
AAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGAT
CAAGTGACCATAGGTGTGTGGGTTTCATATCTGGGTCTTCAATTCTATTC
CATTGGTCTACTTGTCTGTCTCTATACCAGTATCATGTTGTCTTTTATCA
TCATTGCTTCTTGTATAAAAGCTTTTAGTCTTGGGCTTGTTTCATTCTCT
CCGGAAGTTCTTTTTATTCCTGGATAAAAAATTTTTGTTTACCCAAAGTT
TTTTTTGCTATCTCCC
TTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGGCAGCAAATCTCAAAGC
TGTCACTTCTACCAAGGTAACCTGCCACTCCTTAACATATTCATTTCCCA
TGAGTAAAGTGGGCAATACTGATGTGTTTTTGTTTCCTGATGCTCCAGCT
TGAAAACTCTGGGGATAAGAAAGACCTAAGGAAAGGTGGTGGGGGTGGGG
GAACAGCTACAGAGGACTTTTTGTAATTCTTGGACATGGTCATCAGGTGA
CATTGTTGTCCTTCATTTTTCTATATTCCCCGAGGACATTTGCTCTCAAG
TAACTCCACCTATGATCCTATTGTAAAAATATCTGTCTCCTGTATCATGT
GAGGCTATGCCAGTGCCTGGCAAATACATAAGTGGATGCTCACAGTCATC
TATTGTATGGAACACAGGGCCCCCAATGTAGGAGCTAGAGAAAGTACCCA
ATGAGCTGAAGGTCTTTGCATCCCTATATGTGCAACAACAACATGATCTA
TCCTGAACTTTCAGAGCTCATGTTTCTAACTGCTTATGTACTCATAATAT
GTTTCAATCCCGTCTTTTCTTGTCAACAGAGTTCTCCTTGCTATTTGCAC
ATTTTAATATGTTCCCCGCTTACTCATTCACGCTCTCTTTCATTTATAAG
CCCTTTTTTCTTCTCTCCTATTATTTTTTCTCCCACCATCATTTTTTTCT
AATATCCTTTTCTTCCTTCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_f01.g1 MSMg01no405_f01.g1 CHROMAT_FILE:
MSMg01no405_f01.g1 PHD_FILE: MSMg01no405_f01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:16 2005
         (389 letters)



>mm_chr17_69881830_69882619
          Length = 790

 Score =  679 bits (351), Expect = 0.0
 Identities = 381/393 (96%), Gaps = 7/393 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataggcagcaaatctcaaagctgtca---cttctaccaaggtaacctgccactccttaac 57
           ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||
Sbjct: 511 ataggcagcaaatctcaaagctgtcacttcttctaccaaggtaacctgccactccttaac 452

                                                                       
Query: 58  atattcatttcccatgagtaaagtgggcaatactgatgtgtttttgtttcctgatgctcc 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 atattcatttcccatgagtaaagtgggcaatactgatgtgtttttgtttcctgatgctcc 392

                                                                       
Query: 118 agcttgaaaactctggggataagaaagacctaaggaaaggtggtgggggtgggggaacag 177
           ||||||||||||||||||||||||||||||||||||||||||  ||||| | ||||||||
Sbjct: 391 agcttgaaaactctggggataagaaagacctaaggaaaggtg--ggggg-gagggaacag 335

                                                                       
Query: 178 ctacagaggacttt-ttgtaattcttggacatggtcatcaggtgacattgttgtccttca 236
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ctacagaggactttactgtaattcttggacatggtcatcaggtgacattgttgtccttca 275

                                                                       
Query: 237 tttttctatattccccgaggacatttgctctcaagtaactccacctatgatcctattgta 296
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 274 tttttctatattccccgaggacatttgctctcaagtaactccacctatgagcctattgta 215

                                                                       
Query: 297 aaaatatctgtctcctgtatcatgtgaggctatgccagtgcctggcaaatacataagtgg 356
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 aaaatatctgtctcctgtctcatgtgaggctatgccagtgcctggcaaatacataagtgg 155

                                            
Query: 357 atgctcacagtcatctattgtatggaacacagg 389
           |||||||||||||||||||| ||||||||||||
Sbjct: 154 atgctcacagtcatctattggatggaacacagg 122


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 790
Length adjustment: 9
Effective length of query: 380
Effective length of database: 781
Effective search space:   296780
Effective search space used:   296780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)