BAC Information

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BAC

Clone NameMSMg01-407A11
Chromosome17 (Build37)
Map Location 92,066,045 - 92,252,989
singlet/doubletdoublet
Overlap geneLOC100043742
Upstream geneNrxn1, EG668871, LOC668872, LOC627235, LOC100043741
Downstream geneEG640442, LOC627395, LOC676141, LOC668877
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407A11.T7 (MSMg01no407_a11.b1)MSMg01-407A11.TJ (MSMg01no407_a11.g1)
ACCAG505084AG505085
length732748
length of high quality
(start - end)		409 (322 - 730)554 (78 - 631)
definitionCHROMAT_FILE: MSMg01no407_a11.b1 PHD_FILE: MSMg01no407_a11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:33 2005CHROMAT_FILE: MSMg01no407_a11.g1 PHD_FILE: MSMg01no407_a11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(92,252,581 - 92,252,989)(92,066,045 - 92,066,598)
sequence
CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTCTGTCCCGATGCTTGCTTCTTTCTGATCAAAAACCATTAATA
AGAATTTGGGGTATCTTGATGAAAAAAACGTTATCAAGAATTTTGTAATT
TCATTACCTTCTAATATCCCCACTCTCTGAATGGTTTCCGTGGTTTTTTG
ATGCTATCATTTCTATATGATTGATATCCACATTATTCTTGGAATGTATA
CATTTTCAAATTCTATTCCTAGCATATAAAATATGTAGATAAATAAATGA
AGAACAAATAAACACTTGAACCCTAGTACTAAACTCATCAAAAGTGTCAA
TTATAAAACATACTTATGTCTAAGTATTAAAATGTGATTTGATTTGGCTT
CATTTCTACAAATTGTTTAAATAAATAGAATTTTAGATAATTAAAATTAT
AATTATAGAGCATAATTGAATATCAATTAGAGATTTATTTTATTTGTTCT
CTTCATGATAATGTGAAAATTAAAAGTGCAAATAGGTTGTCAGTAGATAT
TAACAAATTTAGTGTAATTGATAAATAGTGGTAATGTTAGGAAAATAATT
CAATTTATAAATTGTCCATTTAATAAAGTACATAACACTTTACATACTTT
TGTATAATCTGATAATATTGAAATAGTCTATAAATATTGGTTATTTAAAA
TTTTTGTTACTTATTGTAAGTTCAATTAGGCA

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAAAATACTTAAAAGGAACCA
AGTTTTGTATGTGGAGTTAAAGAATAAGAAGAGTGGCTTGGTTGCAGGTC
AGGCTCTGCCCTCTTGCGTCAATGCTGGTGGACTCTGCAACCGGCTAGTT
GGCTGTCTCTGCTCCATCCAGCTTCTGCCCCTAATTTGGCCTGTAGGGCT
CCCACCTCCTGACATGGGAGCTAGGACAGACAGGGCTTCTGGGAAGGAGC
AGCTGCTGTTGTATGAGAATCTTCTGCGTCTTCGGTTTAATTTATTTTTG
GAAATCAAATTCAATATTAAAAAGAACAATTACACATTATTGGAAGCCAT
TTCTGCTAATTCATTACATTTTAACTTATTATTTGATTTGAATACTGTCT
AGGGAGGAGCTGTGAGTGCTAGGGAAGATGATGACTTAATTGATAACCTT
AAAGAAGCTCAGTACATCAGAGCTAAAAGTGTAGAGCAAGCCTTCAGAGC
CATTGACCGAGGAGATTACAATCTGGAAGGCTACAGAGACAATGCTTACA
AAGACAGCCTGGAAGCACTGAAACACACACTTGTTAGCACCTTGCATTTA
TTCTGAAATTATGAAAGTTTTGAAATTTCAACCAGGAATACCTTTTCATA
ACCTGGGAAAATGGAACCGGATATTTTAGTACAATGGTCTTTTGGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_a11.b1 MSMg01no407_a11.b1 CHROMAT_FILE:
MSMg01no407_a11.b1 PHD_FILE: MSMg01no407_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:33 2005
         (409 letters)



>mm_chr17_92252245_92253053
          Length = 809

 Score =  791 bits (409), Expect = 0.0
 Identities = 409/409 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctagtactaaactcatcaaaagtgtcaattataaaacatacttatgtctaagtattaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cctagtactaaactcatcaaaagtgtcaattataaaacatacttatgtctaagtattaaa 686

                                                                       
Query: 61  atgtgatttgatttggcttcatttctacaaattgtttaaataaatagaattttagataat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atgtgatttgatttggcttcatttctacaaattgtttaaataaatagaattttagataat 626

                                                                       
Query: 121 taaaattataattatagagcataattgaatatcaattagagatttattttatttgttctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taaaattataattatagagcataattgaatatcaattagagatttattttatttgttctc 566

                                                                       
Query: 181 ttcatgataatgtgaaaattaaaagtgcaaataggttgtcagtagatattaacaaattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttcatgataatgtgaaaattaaaagtgcaaataggttgtcagtagatattaacaaattta 506

                                                                       
Query: 241 gtgtaattgataaatagtggtaatgttaggaaaataattcaatttataaattgtccattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtgtaattgataaatagtggtaatgttaggaaaataattcaatttataaattgtccattt 446

                                                                       
Query: 301 aataaagtacataacactttacatacttttgtataatctgataatattgaaatagtctat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aataaagtacataacactttacatacttttgtataatctgataatattgaaatagtctat 386

                                                            
Query: 361 aaatattggttatttaaaatttttgttacttattgtaagttcaattagg 409
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaatattggttatttaaaatttttgttacttattgtaagttcaattagg 337


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no407_a11.g1 MSMg01no407_a11.g1 CHROMAT_FILE:
MSMg01no407_a11.g1 PHD_FILE: MSMg01no407_a11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:33 2005
         (554 letters)



>mm_chr17_92065845_92066798
          Length = 954

 Score = 1056 bits (546), Expect = 0.0
 Identities = 552/554 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaaaatacttaaaaggaaccaagttttgtatgtggagttaaagaataagaagagtggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaaaatacttaaaaggaaccaagttttgtatgtggagttaaagaataagaagagtggc 260

                                                                       
Query: 61  ttggttgcaggtcaggctctgccctcttgcgtcaatgctggtggactctgcaaccggcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggttgcaggtcaggctctgccctcttgcgtcaatgctggtggactctgcaaccggcta 320

                                                                       
Query: 121 gttggctgtctctgctccatccagcttctgcccctaatttggcctgtagggctcccacct 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttggctgtctctgctccgtccagcttctgcccctaatttggcctgtagggctcccacct 380

                                                                       
Query: 181 cctgacatgggagctaggacagacagggcttctgggaaggagcagctgctgttgtatgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgacatgggagctaggacagacagggcttctgggaaggagcagctgctgttgtatgag 440

                                                                       
Query: 241 aatcttctgcgtcttcggtttaatttatttttggaaatcaaattcaatattaaaaagaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatcttctgcgtcttcggtttaatttatttttggaaatcaaattcaatattaaaaagaac 500

                                                                       
Query: 301 aattacacattattggaagccatttctgctaattcattacattttaacttattatttgat 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattacacattattgtaagccatttctgctaattcattacattttaacttattatttgat 560

                                                                       
Query: 361 ttgaatactgtctagggaggagctgtgagtgctagggaagatgatgacttaattgataac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgaatactgtctagggaggagctgtgagtgctagggaagatgatgacttaattgataac 620

                                                                       
Query: 421 cttaaagaagctcagtacatcagagctaaaagtgtagagcaagccttcagagccattgac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttaaagaagctcagtacatcagagctaaaagtgtagagcaagccttcagagccattgac 680

                                                                       
Query: 481 cgaggagattacaatctggaaggctacagagacaatgcttacaaagacagcctggaagca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cgaggagattacaatctggaaggctacagagacaatgcttacaaagacagcctggaagca 740

                         
Query: 541 ctgaaacacacact 554
           ||||||||||||||
Sbjct: 741 ctgaaacacacact 754


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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