BAC Information

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BAC

Clone NameMSMg01-407J12
Chromosome17 (Build37)
Map Location 55,903,071 - 55,903,655
singlet/doubletsinglet
Overlap geneEmr4
Upstream geneEG629178, LOC100043833, LOC100043485, LOC677496, St6gal2, LOC383258, Pot1b
Downstream geneZfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407J12.T7 (MSMg01no407_j12.b1)MSMg01-407J12.TJ (MSMg01no407_j12.g1)
ACCAG505516AG505517
length729739
length of high quality
(start - end)		589 (51 - 639)496 (80 - 575)
definitionCHROMAT_FILE: MSMg01no407_j12.b1 PHD_FILE: MSMg01no407_j12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:16 2005CHROMAT_FILE: MSMg01no407_j12.g1 PHD_FILE: MSMg01no407_j12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:16 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATTGTTTTTAATAGCTGAGTTATAGTACTCCATTGTGTAA
ATGTACCATATTTTCTGTATCCATTCCTCTATTGAGGAACATATGGGTTC
TTTCCAGCTTCTTGTTATTATAAATGAGGCTGCTATGAATATAGTAGAGC
ATATGTCCTTATTGCAGGTTGGAGCATCTTCTGGGTATGCCCAGGAGTGG
TATTGCTGGATCTTCCGGTAGAACTATTGGACTCACAAATTTTTTGCTGG
ACACTGGCCCAGAGTTTTAGAGGAGGGCCGAGTGCTGGGTCCCAGTATCC
ACCAAGAATTGGGTGGGTTTCCCCTTCCACTTTCAAGGTTAACCTGGGCT
TGGGGAGGGGGTTCGAACCCCATCCTCCCTAGTCACTGTCTTCCCCAAAG
CTAACACCTTCACTATTTGGGGGTGCTTTTCCCAAGGTCTGGAATTTCCT
GACCCCAGCTTCTGTTTGTTGGGGCACTCTCAGGCCCAGTGGCCCCTCTC
CTTGAAGTATATGCACTGGTCATTTTCAAGGTGTTTACTGTCTCTCTTTG
GTTGGAATCTCTCTTCTCTGTTTTCACTAACAACTGTAGCCAAGGTTCTC
TGTAAATTCCTTTCTTTTGGTCATCTCCCTTTCATCTTCTTCCTTTCTCT
TTCTCTGGACTTTCTCCTCCTCTGTCTCC

NCCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATACTGGTGAGAAACCCTATA
AATGCAATCAGTGTGGGAAAGCCTTTGCATGTAACAGTAATCTTCAAAAG
CATGAAAGAACACATACTNGGAGAGAAACCCTATAAATGTAATCAATGTG
GCAAAGCCTTTACATGTCATAGTACTCTTCAAATCCATGAAAGAATACAT
ACTGGAGAGAAACCCTATAAATGTAATCAATGTGGTAAAGCCTTTGCACG
TAAAAGATATCTTCAAATCCATGAAAGAATTCATACTGGAGAGAAACCCT
ATGAATGTAATCAATGTGGTAAAGCCTTTGCATATAGCAGTAGTCTTAAC
AAGCATGAAAGAACTCATACTGCAGAGAAACCCTTTGAATGTAATCAGTG
TGGTATAGCCTTTGCATGTCTCATTACTCTTCAAAAGCATGAAGGAAATC
ATACTGAAAAAATTCCCCAGCAATCTAAGAAATGAAGTGTAGCCTTGTAT
ACTACATTCATTTTCCCTTCTGAGTTTTCTCAGTGATGGGTGATGAAGAT
TAGTAGAACCATTCTTCATTAAAATATTGTCTCCTTTTCAAATTTTAGAC
ATATTGTCCCTCCAATATAAGAAAACCAGACAATTTGGATTATAAAATCT
ATTTGTGAAAGAAAAAATTTAGGTTTATTTGGATTAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_j12.b1 MSMg01no407_j12.b1 CHROMAT_FILE:
MSMg01no407_j12.b1 PHD_FILE: MSMg01no407_j12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:16 2005
         (589 letters)



>mm_chr17_55902867_55903855
          Length = 989

 Score = 1116 bits (577), Expect = 0.0
 Identities = 583/585 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattgtttttaatagctgagttatagtactccattgtgtaaatgtaccatatttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattgtttttaatagctgagttatagtactccattgtgtaaatgtaccatatttt 264

                                                                       
Query: 65  ctgtatccattcctctattgaggaacatatgggttctttccagcttcttgttattataaa 124
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgtatccattcctctattgagggacatatgggttctttccagcttcttgttattataaa 324

                                                                       
Query: 125 tgaggctgctatgaatatagtagagcatatgtccttattgcaggttggagcatcttctgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgaggctgctatgaatatagtagagcatatgtccttattgcaggttggagcatcttctgg 384

                                                                       
Query: 185 gtatgcccaggagtggtattgctggatcttccggtagaactattggactcacaaattttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtatgcccaggagtggtattgctggatcttccggtagaactattggactcacaaattttt 444

                                                                       
Query: 245 tgctggacactggcccagagttttagaggagggccgagtgctgggtcccagtatccacca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgctggacactggcccagagttttagaggagggccgagtgctgggtcccagtatccacca 504

                                                                       
Query: 305 agaattgggtgggtttccccttccactttcaaggttaacctgggcttggggagggggttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agaattgggtgggtttccccttccactttcaaggttaacctgggcttggggagggggttc 564

                                                                       
Query: 365 gaaccccatcctccctagtcactgtcttccccaaagctaacaccttcactatttgggggt 424
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 565 gaaccccatcctccctagtcactgtcttccccaaagctaacaccttccctatttgggggt 624

                                                                       
Query: 425 gcttttcccaaggtctggaatttcctgaccccagcttctgtttgttggggcactctcagg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcttttcccaaggtctggaatttcctgaccccagcttctgtttgttggggcactctcagg 684

                                                                       
Query: 485 cccagtggcccctctccttgaagtatatgcactggtcattttcaaggtgtttactgtctc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cccagtggcccctctccttgaagtatatgcactggtcattttcaaggtgtttactgtctc 744

                                                        
Query: 545 tctttggttggaatctctcttctctgttttcactaacaactgtag 589
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tctttggttggaatctctcttctctgttttcactaacaactgtag 789


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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