BAC Information

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BAC

Clone NameMSMg01-411I09
Chromosome17 (Build37)
Map Location 79,653,714 - 79,820,602
singlet/doubletdoublet
Overlap geneLOC383277, Cdc42ep3, LOC639964
Upstream geneCrim1, Fez2, LOC100043888, Hdac1-ps, Vit, Strn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812
Downstream geneAW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074, Hnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57, Morn2, Sos1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411I09.T7 (MSMg01no411_i09.b1)MSMg01-411I09.TJ (MSMg01no411_i09.g1)
ACCAG508513AG508514
length771793
length of high quality
(start - end)
242 (76 - 317)141 (78 - 218)
definitionCHROMAT_FILE: MSMg01no411_i09.b1 PHD_FILE: MSMg01no411_i09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:36 2005CHROMAT_FILE: MSMg01no411_i09.g1 PHD_FILE: MSMg01no411_i09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,653,714 - 79,653,955)(79,820,462 - 79,820,602)
sequence
TGATCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGATCC
GCGGAATTCTACTGTACCTTAAACAGAGCCATCCTTATAAAGATAGCACC
TTTGCTTGAAAAATAGTATCATGTATTCCTGGGTAAAAGCAAAATATAAA
TTTAAATGTTTTATGCACTTATTTTTTTTTTGGTTTATTTCACATTAAGT
TTACTAGTAATGATCAATGTCTTTCATATTTAATTGTTTGTTCACAGAAC
TCTGCTTTTTTTTCTTTTTTATTTCTCTGAAAATAGCTGATGAAGTATCG
AAAACATTAAGGGCTGCTTTTATACTTAGACCAGACGATAAAGCCTTTTT
GGATTGCGTTAGGGAACGTTGACTTTCTATAATTGCAATGTTTAATTGCT
GATTACAGTTTAATTAATACTTGAACAGTTACATTTTATAATCTCAACTA
CCATTAACACAATATCTGGGAAGAACCAACAATAGATGAGTATATATATA
CATATACATATACATATCCATATATATATATACCACACATATATCCCATT
AACAGGCACTGCGTGACTTTACTCTAACCCCAAAGGTTTCCCCTGATTAT
TATGCCACTATCCGTTCGTTCCCGTTCCGCCTTGTGCCCCTATACCAGTC
AATACTTTTTTCTATGTCCTTCCCACTACCTTTCCTTCCCTCCTTTTCTC
CTTCACTTCGTTATCCCCCTCCTCTATTCGCCACACCTTCCTTATCCACC
TGTTTTTTCTACTTCCCCATT
CGATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTGTCTAGCGGAATTCACAGCCACTGGGACTGTACAAACAA
GAATTATACAAGAGCAAGCCAGCCAAAATCCCAGGCTAGAGGTAAAGGGA
CCCTAAGGGTCTACCTCCACCTGAGGAACTCCTGGCATTTGAGAATTACT
GGGGAAGAGAAAGGATAAGGGCTCTAATACACTTCCTATGCCCCACTATA
TGTTCCACACCCATGCATAAACAGGGAGCTTCAAGTGTCCATTAAGAAAA
GGAGAGCTAGGTGTATTTTTTTATGCCTTTAATCCCGGAACTCAGGAGGC
AGAGGTAGTACAGATCTCTATGACTTCATGGCTAGCCCGGTCTACATAGA
GACCTTGCCCCAAAGAGAAAGAGAGAATATGGTATTGGCAGGTAAAGTGT
TGCTAATGGATGGATTGCACAGCTTTTCCTTTCTTCTTCCCCTTCCTTCT
TTTTTCCTCCCCCTTTCCTCTTTTTCTTTCTTTTCTTTTCTTTCCCCTTT
TTTCTTCTCCCCCCTTTTCCTATCCCCCTTTCCCCTCCCTTTCCCCCCTT
TTTTCCCCTTTCTTTTTCCTTTTTTCCCTTTTTCTTTCCCCCTTTTCCCT
TTCCCTTTTGATCTTCTCCTTTTCGCTTCTTTCCCCACCCTTTTTCCCCT
CCTTCTTTTTCTCCCTCTTCTTTCGGCTGTCCGTCCATTGATTCTTCCGC
CCCCCCTCTTCGTCTCCCTTTTTCCTTTTCACTCCCATATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_i09.b1 MSMg01no411_i09.b1 CHROMAT_FILE:
MSMg01no411_i09.b1 PHD_FILE: MSMg01no411_i09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:36 2005
         (242 letters)



>mm_chr17_79653514_79654155
          Length = 642

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagccatccttataaagatagcacctttgcttgaaaaatagtatcatgtattcctgggta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagccatccttataaagatagcacctttgcttgaaaaatagtatcatgtattcctgggta 260

                                                                       
Query: 61  aaagcaaaatataaatttaaatgttttatgcacttattttttttttggtttatttcacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagcaaaatataaatttaaatgttttatgcacttattttttttttggtttatttcacat 320

                                                                       
Query: 121 taagtttactagtaatgatcaatgtctttcatatttaattgtttgttcacagaactctgc 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagtttactagcaatgatcaatgtctttcatatttaattgtttgttcacagaactctgc 380

                                                                       
Query: 181 ttttttttcttttttatttctctgaaaatagctgatgaagtatcgaaaacattaagggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttttttcttttttatttctctgaaaatagctgatgaagtatcgaaaacattaagggct 440

             
Query: 241 gc 242
           ||
Sbjct: 441 gc 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no411_i09.g1 MSMg01no411_i09.g1 CHROMAT_FILE:
MSMg01no411_i09.g1 PHD_FILE: MSMg01no411_i09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:36 2005
         (141 letters)



>mm_chr17_79820262_79820802
          Length = 541

 Score =  265 bits (137), Expect = 8e-76
 Identities = 140/141 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agccactgggactgtacaaacaagaattatacaagagcaagccagccaaaatcccaggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 agccactgggactgtacaaacaagaattatacaagagcaagccagccaaaatcccaggct 282

                                                                       
Query: 61  agaggtaaagggaccctaagggtctacctccacctgaggaactcctggcatttgagaatt 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 agagggaaagggaccctaagggtctacctccacctgaggaactcctggcatttgagaatt 222

                                
Query: 121 actggggaagagaaaggataa 141
           |||||||||||||||||||||
Sbjct: 221 actggggaagagaaaggataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 541
Length adjustment: 8
Effective length of query: 133
Effective length of database: 533
Effective search space:    70889
Effective search space used:    70889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)