Query= MSMg01no412_b05.b1 MSMg01no412_b05.b1 CHROMAT_FILE:
MSMg01no412_b05.b1 PHD_FILE: MSMg01no412_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:19 2005
(579 letters)
>mm_chr17_54435529_54436506
Length = 978
Score = 1073 bits (555), Expect = 0.0
Identities = 570/575 (99%), Gaps = 1/575 (0%)
Strand = Plus / Plus
Query: 5 gaattcctttgaggacacaccttgactttttcccttttataccaaggatcctgaaaaact 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctttgaggacacaccttgactttttcccttttataccaaggatcctgaaaaact 264
Query: 65 tacttttattgttgtagattgtttcctttaaggaaaataggtattaaatgagaaaagtaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tacttttattgttgtagattgtttcctttaaggaaaataggtattaaatgagaaaagtaa 324
Query: 125 gcttctaacaggaataattagattagaattctactgcctccaaaattatctatttaggca 184
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 325 gcttctaacaggaataattagattagaattctactgccttcaaaattatctatttaggca 384
Query: 185 aaaaactacaaccaggtagtattcacttatcatttcagagagctcagtcacaaccccaaa 244
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 385 aaaaactacaaccaggtagtattcacttgtcatttcagagagctcagtcacaaccccaaa 444
Query: 245 tagacacattgagacgccatcacattgtttcatcgattctcatctccactcctttgtttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagacacattgagacgccatcacattgtttcatcgattctcatctccactcctttgtttt 504
Query: 305 ttaccattcctatccactagcccgtcaagagagaccacgttgcttccctaatattaagtt 364
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 t-accattcctatccactagcccgtcaagagagaccacgttgcttccctaatattaagtt 563
Query: 365 cagtgatttattgtaaaattgtttttgtctagaattactgaaattaaaacatgttcattt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cagtgatttattgtaaaattgtttttgtctagaattactgaaattaaaacatgttcattt 623
Query: 425 tgttttaaattaaatatgaagtcactttaaaatataagttgtggactgaaagagctccaa 484
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgttttaaattaaatatgaagccactttaaaatataagttgtggactgaaagagctccaa 683
Query: 485 aggacaaaggcaatgtgtgatttctccctctgagtagaaaccagcctgggaagggaatac 544
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 684 aggacaaaggcaatgtgtgatttctccctttgagtagaaaccagcctgggaagggaatac 743
Query: 545 agagaaacctacctgtcatggtaaaaccaccaacc 579
|||||||||||||||||||||||||||||||||||
Sbjct: 744 agagaaacctacctgtcatggtaaaaccaccaacc 778
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 978
Length adjustment: 10
Effective length of query: 569
Effective length of database: 968
Effective search space: 550792
Effective search space used: 550792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no412_b05.g1 MSMg01no412_b05.g1 CHROMAT_FILE:
MSMg01no412_b05.g1 PHD_FILE: MSMg01no412_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:20 2005
(472 letters)
>mm_chr17_54612607_54613481
Length = 875
Score = 841 bits (435), Expect = 0.0
Identities = 464/475 (97%), Gaps = 3/475 (0%)
Strand = Plus / Minus
Query: 1 tctttgaaactcctgctacatctgcttctgtgtatataagacacatgtatacaacagaaa 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 675 tctttgaaactcctgctacatctgcttctgtgtatatacgacacatgtatacaacagaaa 616
Query: 61 atgagtctagagtcactagca---cttcttagatttttaagaaacttgcaaatggttctt 117
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 615 atgagtctagagtcactagcacttcttcttagatttttaagagacttgcaaatggttctt 556
Query: 118 ctgtgtcatgatgctaattgctgctgctatcacatgcatatttatgctgcttgtactata 177
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 555 ctgtgccatgatgctaattgctgctgctatcacatgcatatttatgcagcttgtactata 496
Query: 178 cacttctctgatgcaagtttataaaaacactttaccagacagatgttcttcatctagaac 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cacttctctgatgcaagtttataaaaacactttaccagacagatgttcttcatctagaac 436
Query: 238 tattattgatttaacttccgttggatctgtgttcatgtgtacataagtgaaccgtgacta 297
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tattattgatttaacttccactggatctgtgttcatgtgtacataagtgaaccgtgacta 376
Query: 298 tttcctatttccgattagctatgctcctgttttgcccacttcaagcagtatctcttaata 357
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tttcttatttccgattagctatgctcctgttttgcccacttcaagcagtatctcttaata 316
Query: 358 gttaaaaggcattaggcattggtcattgaaggtacacatctgtgaattaacatttcattt 417
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gttaaaaggcattagacattggtcattgaaggtacacatctgtgaattaacatttcattt 256
Query: 418 tcaactagtttaaatgtttagactcactggttgtggttttgtaaaactttataaa 472
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tcaactagtttaaatgtttagactcactggttgtggttttgtaaaactttataaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 875
Length adjustment: 10
Effective length of query: 462
Effective length of database: 865
Effective search space: 399630
Effective search space used: 399630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
