Query= MSMg01no412_k03.b1 MSMg01no412_k03.b1 CHROMAT_FILE:
MSMg01no412_k03.b1 PHD_FILE: MSMg01no412_k03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:04 2005
(461 letters)
>mm_chr17_58724763_58725623
Length = 861
Score = 731 bits (378), Expect = 0.0
Identities = 405/414 (97%), Gaps = 2/414 (0%)
Strand = Plus / Minus
Query: 1 agtggagttattaagcacctggaagccctccttaacataccactaggtaattgtggtttt 60
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 412 agtggaattattaagcacctggaagccctccttaacataccactaagtaattgtggtttt 353
Query: 61 caaaacaaaacaaaaatttaagttcaagattgcttattggtagggaatgaatagccatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 caaaacaaaacaaaaatttaagttcaagattgcttattggtagggaatgaatagccatca 293
Query: 121 agtttttcttttctttttttaatcttaatgacacagtaaatggaattgttggaaatttgg 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 agtttttattttctttttttaatcttaatgacacagtaaatggaattgttggaaatttgg 233
Query: 181 tggaaaggagacaattaaaatatttacttagagggccagagagagagagctcagtgatta 240
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 232 gggaaaggagacaattaaaatatttacttagagggccagagaga-a-agctcagtgatta 175
Query: 241 aacacaactgttgtaaacctaaaacctgaagtcaatccccagaacctacatagcagaaaa 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 aacacaactggtgtaaacctaaaacctgaagtcaatccccagaacctacatagcagaaaa 115
Query: 301 agagaaataatccctttaaattgtcccttgaccctcacaggtaccatggcacatgaagac 360
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 114 agagaagtaatccctttaaattgtcccttgaccttcacaggtaccatggcacatgaagac 55
Query: 361 gaatggacagatacaaacattacatacattaaacaaatataaagactttaaatt 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 gaatggacagatacaaacattacatacattaaacaaatataaagactttaaatt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no412_k03.g1 MSMg01no412_k03.g1 CHROMAT_FILE:
MSMg01no412_k03.g1 PHD_FILE: MSMg01no412_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:04 2005
(482 letters)
>mm_chr17_58551516_58552398
Length = 883
Score = 806 bits (417), Expect = 0.0
Identities = 469/491 (95%), Gaps = 10/491 (2%)
Strand = Plus / Plus
Query: 1 acattctagaacacataaaatgagttcagacttaacagctgagctattttccaagaggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acattctagaacacataaaatgagttcagacttaacagctgagctattttccaagaggag 260
Query: 61 ggggactggctgttctgtggggcactgtggtcacctgcagatctgaggattctgggggga 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggactggctgttctgtggggcactgtggtcacctgcagatctgaggattctggggggg 320
Query: 121 cggagcttagtttgtgaagcacatcacatttcccagtctgtatcttcacacatgtacaca 180
|| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 ggggggttagtttgtgaagcacatcacatttcccagtctgtatcttcacacatatacaca 380
Query: 181 aacatgtcccatgtccttgacttctgtgcctaaataaggtaatatagtacctcaggcttt 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacatgttccatgtccttgacttctgtgcctaaataaggtaatatagtacctcaggcttt 440
Query: 241 agggtcttttggtagcagagcataaaattaatttgttgcaaacatcttgatttggtcatt 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 agggtcttttggtagcagagcataaaattaatttgttgcatacatcttgatttggtcatt 500
Query: 301 ttatggtaacaatattcttttt-aacattttt--------ttagtctttttttattagat 351
|||||| ||||||||||||||| ||||||||| |||||||||||| |||||||
Sbjct: 501 ttatggaaacaatattcttttttaacatttttaaatttttttagtctttttt-attagat 559
Query: 352 attttcttcatttacataacaaatgctatcccaaaagttccctataccctcccccagccc 411
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 560 attttcttcatttacatatcaaatgctatcccaaaagtcccctataccctcccccagccc 619
Query: 412 tgctccccaacccacccactcccaaatcctggccctggcattcccctgtactgaggcata 471
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 620 tgctccccaacccacccactcccaaatcctggctctggcattcccctgtactgagacata 679
Query: 472 taattttccca 482
|||||||||||
Sbjct: 680 taattttccca 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 883
Length adjustment: 10
Effective length of query: 472
Effective length of database: 873
Effective search space: 412056
Effective search space used: 412056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
