BAC Information

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BAC

Clone NameMSMg01-417G09
Chromosome17 (Build37)
Map Location 26,464,028 - 26,619,825
singlet/doubletdoublet
Overlap geneEG240055, C230078M08Rik
Upstream geneLOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229
Downstream geneDusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417G09.T7 (MSMg01no417_g09.b1)MSMg01-417G09.TJ (MSMg01no417_g09.g1)
ACCAG512988AG512989
length794746
length of high quality
(start - end)
243 (73 - 315)244 (74 - 317)
definitionCHROMAT_FILE: MSMg01no417_g09.b1 PHD_FILE: MSMg01no417_g09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:16 2005CHROMAT_FILE: MSMg01no417_g09.g1 PHD_FILE: MSMg01no417_g09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,619,583 - 26,619,825)(26,464,028 - 26,464,271)
sequence
GGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAGACTACCCTAGTGTACATAGTGAGTTCCTGGACAGCCAGGG
TTACATAGTGAGAACTTGTCTCAAGAAAACAACTAGATCCAAATAAATAA
ACCTGGGTCTTCCTTCCTTGTGATTTGATAGTAGTTCATCTCCAGTGGAG
AAAATTTATGAAAATAAATCTAAACACAGCTAGCTTGAGGCAGGAGCTGC
TGCACACTGCAGTCTCTCTATCGAATCATCCCTGATGTCTGTTATGTCAT
GCTTTTCTCTAGGAGATGTGTTTGTCTGTGGACGTATAATGCTGTGGGAA
GGGGCTGGGGCTCAATAGGAGGAAGCGGTTCTGGATCACACCTTCTGCCT
GGTAGAAGCCTCTCTTACTCTACTGGGCTGTGGTAAATTTAGTGTTAGGC
AGCTCTCTAGAGTATGTGCTGAGCCCATACTCTGCTTGTTTTTACCCTTG
GTTTGTCCATTACTGGATGTACCGACGTGTTCGCTCTGTTATTGCGGAAG
GTGTAGTCAGTTTCCTTCCTGACAATTGTTTTCACTATCGCTTACTGCAC
CAGTCTTCGGTCTCGTGTTCTTTCGTGTACGCTTTGCGGCTGTTTTTTTT
TCCCCTTCTCCTTTTTTTTTTTTGTCCCCTACTTACTTTTATCTCTCCTT
TTTTCGCCTTTACGCCCTTTTATTTTCGCATACTTCCCCACTCTTTTTTC
GTTTATTATTTACACGTCACTTATGCTTATCCCGTCTGCTTTTC
NTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTGTCTAGCGGAATTCCTTAAACACCTCCGAGGCCACTG
AAGACACTACGGAAATCAGTTCATGTCCCTGAAGTGACCTGGTGCCCTGG
CCAAGGTTTATCCTTACCCAAATACATCCTGAGTCTTTGCAGCACCCCCG
AACAAAGGCCACAGGCAGGATGGAGCAGAGACCTGCCTGGCAAGCCTGGA
TGCCTGGACTTTCCTCTCTCCAGGGAAAAGCTGTATGTGCGCTGGGTGAG
AGGGCCAGCAAGGGCTCCTTTTTACAGTCCAGCACACTCCTGCAATTAGG
GCCAGCTCAGGGGCTGCTAATGAGTTCTCCAGGGGGTCACTTGATGACAG
GAAGAAGAAAGCTGCTCCAGGAACAGACTCTAGGGCCAGGTGGGAGGCAG
TGGAGGTGGCAGGGAGGGCAGACCTCACAATGGAAGGGAGTAGTTTCTTC
TGGGGAACTCAAGATGTAACCTACTTCCTGGGGCAAGACTGCTGTTTCAG
CACTTGGAAGGGAAGCTCATGTGAGTCTCTGTATCTCCTGAGACAGAGGT
GTAAAAGGATCATTCAGGCTGTTTTGACTGTACCCCTAGTTCTCCCAGAT
CTATTTTACAGTTTCCTTGCTCTGCAGCCCCTACTGCATGATTGGCAACC
CCTTATAAACTTCCTTGCTTGCTGCCCCCTCTGGTAGTCCACCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_g09.b1 MSMg01no417_g09.b1 CHROMAT_FILE:
MSMg01no417_g09.b1 PHD_FILE: MSMg01no417_g09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:16 2005
         (243 letters)



>mm_chr17_26619323_26619965
          Length = 643

 Score =  470 bits (243), Expect = e-137
 Identities = 243/243 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacatagtgagttcctggacagccagggttacatagtgagaacttgtctcaagaaaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tacatagtgagttcctggacagccagggttacatagtgagaacttgtctcaagaaaacaa 444

                                                                       
Query: 61  ctagatccaaataaataaacctgggtcttccttccttgtgatttgatagtagttcatctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctagatccaaataaataaacctgggtcttccttccttgtgatttgatagtagttcatctc 384

                                                                       
Query: 121 cagtggagaaaatttatgaaaataaatctaaacacagctagcttgaggcaggagctgctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cagtggagaaaatttatgaaaataaatctaaacacagctagcttgaggcaggagctgctg 324

                                                                       
Query: 181 cacactgcagtctctctatcgaatcatccctgatgtctgttatgtcatgcttttctctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cacactgcagtctctctatcgaatcatccctgatgtctgttatgtcatgcttttctctag 264

              
Query: 241 gag 243
           |||
Sbjct: 263 gag 261


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no417_g09.g1 MSMg01no417_g09.g1 CHROMAT_FILE:
MSMg01no417_g09.g1 PHD_FILE: MSMg01no417_g09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:16 2005
         (244 letters)



>mm_chr17_26463828_26464471
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attccttaaacacctccgaggccactgaagacactacggaaatcagttcatgtccctgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attccttaaacacctccgaggccactgaagacactacggaaatcagttcatgtccctgaa 260

                                                                       
Query: 61  gtgacctggtgccctggccaaggtttatccttacccaaatacatcctgagtctttgcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgacctggtgccctggccaaggtttatccttacccaaatacatcctgagtctttgcagc 320

                                                                       
Query: 121 acccccgaacaaaggccacaggcaggatggagcagagacctgcctggcaagcctggatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acccccgaacaaaggccacaggcaggatggagcagagacctgcctggcaagcctggatgc 380

                                                                       
Query: 181 ctggactttcctctctccagggaaaagctgtatgtgcgctgggtgagagggccagcaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggactttcctctctccagggaaaagctgtatgtgcgctgggtgagagggccagcaagg 440

               
Query: 241 gctc 244
           ||||
Sbjct: 441 gctc 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)