BAC Information

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BAC

Clone NameMSMg01-418B18
Chromosome17 (Build37)
Map Location 83,322,797 - 83,323,316
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043707, LOC625467, LOC668836, EG433141, EG625514
Downstream geneLOC100043711, LOC100043900, AW548124, EG545226, Eml4, Cox7a2l, Kcng3, Mta3, Haao
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418B18.T7 (MSMg01no418_b18.b1)MSMg01-418B18.TJ (MSMg01no418_b18.g1)
ACCAG513528AG513529
length754754
length of high quality
(start - end)
548 (48 - 595)436 (76 - 511)
definitionCHROMAT_FILE: MSMg01no418_b18.b1 PHD_FILE: MSMg01no418_b18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:13 2005CHROMAT_FILE: MSMg01no418_b18.g1 PHD_FILE: MSMg01no418_b18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATCCTTTGACACTGTAAGCCCCAAATAAACTTTTTTTTCCCTT
ATAAGTTGTTCTCGTCATGGTGTTTTATCACAATGATAGAAAAATAAGAC
AATAGCAGTGTTAGAATTGTTCAGTCATTTCCCACTGGAAACAGTGATCA
ACTAGAGCTCTTCCTCACACAGTGCTTATGTGAAAACCCTTTTGCATTGA
GCTCTTATCTGCACATACTGATGCAGTCAGGCTGTTCCATAACATAGAGT
CTTCCAACACAGGCTGTATCCCATTCTGGGATGCTTCAACTTTTTGAGTG
CTTTCCCAGAAAGAAAAGAAAACAATACATAAAGTTTTTGAGGAAAAAAA
AATCTCTTTTTCTGCCATGAAGTTCAGTGGATTTGAAAGATGTGTACACA
TGTGTCCTCTATTAAGGACAATACAGAGTGGTTTTGCTTTCTGGAAAGAC
CTTTTCTGTTTTGTCACATCAACACATCCTCAAGTTTCTCTGAATCTCAA
GTAATCATTGGGCATTTTCCTAGCTCTATAATTTTGCCTGCTGTAGAATT
GTAGTTGAGATCAGATATGTAGATTTTTCTTTTTCTTAGCAATAGGTAAT
AAAGATGACTCTGTTTTTTTTCATGGGCTTGAAGATCTTATCTTTTATAA
CTGCCAAAAGCATCCTGTTTTAATAATGACTTCAGTTGTTGATCCCATTC
TGAG
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGATACGGAATGGCTAAG
AAGCACCTGACAAAATGCTCAGCATCTTTAATCATCAGGGAAATGCAAAT
CAAAACATCCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAAATCA
AAAATTCAGTTGACAGCCGGTGCTGGCAAGGATGTGGAGAAAGAGGAACA
TTCCTCTATTGTTGGTGGAATTGCAAGCTTGTACAACCACTCTGGAAATC
AGTCTAGCGGTTCCTCAGAATATTGGACATAGTACTATCGCAGGATCCCA
TAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACTGGTAAGAAG
GATACATGCTCCACTATGTTCATAGCCGCCTTATTTATAATAACCAGAAG
TTGGAAAGAACCCAGATGCCCCTCAACAGAAGAATGGATACAGAAAATGT
GGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAAAGGATGGACCTGGAGGGCATCATCTTGAGTGA
GGTAACACAATCACCAAAGAACTCACATGATATGTACTCACTGATAAATG
GATATTATCTCCCAAACCTAGGATACCCAAGATATAAGATACAATTTGTG
GAAACACTTGTAGCTCTAGAAGAACGAAGACCAAAGTGGGGATACTCTTT
CCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_b18.b1 MSMg01no418_b18.b1 CHROMAT_FILE:
MSMg01no418_b18.b1 PHD_FILE: MSMg01no418_b18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:13 2005
         (548 letters)



>mm_chr17_83322536_83323483
          Length = 948

 Score =  886 bits (458), Expect = 0.0
 Identities = 511/544 (93%), Gaps = 24/544 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcctttgacactgtaagccccaaataaacttttttttcccttataagttgttc 64
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gaattcatccttggaaactgtaagccccaaataaacttttttttcccttataagttgttc 722

                                                                       
Query: 65  tcgtcatggtgttttatcacaatgatagaaaaataagacaatagcagtgttagaattgtt 124
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ttgtcatggtgttttatcacaatgatagaaaaataagacaatagcagtgttagaattgtt 662

                                                                       
Query: 125 cagtcatttcccactggaaacagtgatcaactagagctcttcctcacacagtgcttatgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cagtcatttcccactggaaacagtgatcaactagagctcttcctcacacagtgcttatgt 602

                                                                       
Query: 185 gaaaacccttttgcattgagctcttatctgcacatactgatgcagtcaggctgttccata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gaaaacccttttgcattgagctcttatctgcacatactgatgcagtcaggctgttccata 542

                                                                       
Query: 245 acatagagtcttccaacacaggctgtatcccattctgggatgcttcaactttttgagtgc 304
           |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 541 acatagagtcttccaacacaggctgtatgccattctgggacgcttcaactttttgagtgc 482

                                                                       
Query: 305 tttcccagaaagaaaagaaaacaatacataaagtttttgaggaaaaaaaaatctcttttt 364
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 481 tttcccagaaagaaaagaaaacaatacataaagttttggaggaaaaaaaaatctcttttt 422

                                                                       
Query: 365 ctgccatgaagttcagtggatttgaaagatgtgtacacatgtgtcctctattaaggacaa 424
           ||||||||||||||| |||||||||||||||||||||||||                   
Sbjct: 421 ctgccatgaagttcaatggatttgaaagatgtgtacacatg------------------- 381

                                                                       
Query: 425 tacagagtggttttgctttctggaaagaccttttctgttttgtcacatcaacacatcctc 484
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 -----agtggttttgctttctggaaagaccttttctgttttgtcacatcaacacatcctc 326

                                                                       
Query: 485 aagtttctctgaatctcaagtaatcattgggcattttcctagctctataattttgcctgc 544
           |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 325 aagtttctctgaatctcaagtaatcattggtcattttcctggctctataattttgcctgc 266

               
Query: 545 tgta 548
           ||||
Sbjct: 265 tgta 262


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)