BAC Information

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BAC

Clone NameMSMg01-419D11
Chromosome17 (Build37)
Map Location 64,542,280 - 64,542,526
singlet/doubletsinglet
Overlap geneLOC669778
Upstream geneFbxl17, Ppia-ps17_1026.1, LOC638867, LOC668677, A930002H24Rik, Fert2
Downstream genePja2, LOC100043582, Man2a1, 4930583I09Rik, LOC100043871
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419D11.T7 (MSMg01no419_d11.b1)MSMg01-419D11.TJ (MSMg01no419_d11.g1)
ACCAG514370AG514371
length731752
length of high quality
(start - end)
79 (334 - 412)248 (62 - 309)
definitionCHROMAT_FILE: MSMg01no419_d11.b1 PHD_FILE: MSMg01no419_d11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:39 2005CHROMAT_FILE: MSMg01no419_d11.g1 PHD_FILE: MSMg01no419_d11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCCTTTAAAATTGGGGCGCCAAAGAATAATATTTCCAAAAGGGCGNGG
AANNCCTGGTTACTGGAACAGGTTCCTTAAGGAGAAATTAAGTGAAACCC
TGGACACCCAACTGAAGGGTCTTAATGTACAGAATTGGATTGAAAGAAGG
CATACCGAACTGGTGTGGAACGGTTTCAAAAAGTCCCAGTGGAATGGTTG
CGAACCTCCACTTGAGACCTGCCCGACAAGATTAACTAATATTTTTTAAG
TAACAATATATGCTTCAGCAATCTACAAGAGAAAAAGCAGGGGCCATGAG
TGTTTCGCTGAATATTTTCTTGAAGCAGATCACAGATAGGAAGAGGTCAG
ACATGCATAGAAGAGGTGCTGCTTGATAGGACAGTGTGAGGCATGGTTGC
CCCAGGCTTGCCCCAAGGATGCCAAGATCATTCTGGCAAAAGCAGGTGGC
TTGGAAGGTGATCACCTCAAGTGTTCATGCCAGTCTGGCTTTGAGAGCCG
TGAATCCAGGAGCAACCGTGAAACGCGATATTGCGCACCACGCGCATAAC
CACACATTGTCCATGGTTTTTTTCTACCCTACCGTCCTGTTTTATTTTTC
CATTTGTACCGACCCCCGACCCTTTTTTGTTTTCACCCTTTTTTTCATTG
CCTTTCCCCGCCCCTTATTTTTTTTTTATTTACCGCCCACTCTTCTTTTT
CTTCTTTTTTTCCCCCTTTTTCCTCCTTTTC
GTGGGAGGCCTGGCGGCCGCCTGGTTTCAAACTAGAGGTGAACTATAGAA
GTTTCAGCACAATTCCTAAGAGGTGTCTGGAGCATTCGCTGTCTAATTTT
CTCTTCTCCATACCATAACCACTTTCCAGCATGTGTCACCATAAATGACA
CTGCATGCTGAAGAACAGTACTCCATCTTTGAAGCATTTATGTCTTCTTT
CTTTCTTTTTTTATTTTTATTTTTAATTTTTGTAGTTATTATCTTTTATT
GGGGGAGGGTTCATCAATCCTTCTTGGCCATCGCCTTCCTCATGGCTGCC
AGTACGTTGCNGGTCNCCTCCCCCTTTCTCTTGGCACGGATGTGCGTGTC
TTTCTGTCACGAGGAGTAGGCTGTCACCCACGGTCATTGCCGCCAGCTAC
ACCCCCACCCGTGCTCGGTGCAGCACGCTGCCTACTCTCTTCTTGATGAA
CTTGGGTGCACACTTGTCCTTCGACACTTTGAGCAACACCATGGCACACC
GCTCTTAGGGTGTGCGCGAGGCTGCACACCCTCCCGGATCATGTCTCGCA
TGAACTTTGGGTGTGCTTGGTGAAGCGCCCGTGGTGCTGTTTTTGCCCCT
CTTGCCAACTTTTTTGCCACCCTGGACCCCCTAATGATTCCCCTTTTTTT
TTTTTTCTTCTACCCCTGTGTCCTTTCCCTTCGAATCCTACCTTAACCAT
CACCTATTCCCTCATCTCTACCTTCCTTATTATTTTTTTTTATCTCTCTT
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_d11.g1 MSMg01no419_d11.g1 CHROMAT_FILE:
MSMg01no419_d11.g1 PHD_FILE: MSMg01no419_d11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:39 2005
         (248 letters)



>mm_chr17_64542203_64542849
          Length = 647

 Score =  433 bits (224), Expect = e-126
 Identities = 242/248 (97%), Gaps = 1/248 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcctaagaggtgtctggagcattcgctgtctaattttctcttctccataccataacca 60
           ||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||| |
Sbjct: 324 attcctaagagatgtctggagcattcgctgtctaattttctcttctccata-gataacta 266

                                                                       
Query: 61  ctttccagcatgtgtcaccataaatgacactgcatgctgaagaacagtactccatctttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctttccagcatgtgtcaccataaatgacactgcatgctgaagaacagtactccatctttg 206

                                                                       
Query: 121 aagcatttatgtcttctttctttctttttttatttttatttttaatttttgtagttatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aagcatttatgtcttctttctttctttttttatttttatttttaatttttgtagttatta 146

                                                                       
Query: 181 tcttttattgggggagggttcatcaatccttcttggccatcgccttcctcatggctgcca 240
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 145 tcttttattgggggagggttcatcaatccttcttggccaccgccttcctcatggcttcca 86

                   
Query: 241 gtacgttg 248
           ||||||||
Sbjct: 85  gtacgttg 78


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 647
Length adjustment: 9
Effective length of query: 239
Effective length of database: 638
Effective search space:   152482
Effective search space used:   152482
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)