Query= MSMg01no419_m17.b1 MSMg01no419_m17.b1 CHROMAT_FILE:
MSMg01no419_m17.b1 PHD_FILE: MSMg01no419_m17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:26 2005
(337 letters)
>mm_chr17_63114084_63114820
Length = 737
Score = 629 bits (325), Expect = 0.0
Identities = 334/337 (99%)
Strand = Plus / Plus
Query: 1 aaataaacacaaggtgcgatcttattgttgcagaattctctaaggaattagacggagata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaataaacacaaggtgcgatcttattgttgcagaattctctaaggaattagacggagata 260
Query: 61 taaattcccttccagaggttaaatcctgacagaaggcaatgctaggagagcatgatggga 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 taaattcccttccagaggttaaatcctgacagaaggcaatgctgggagagcatgatggga 320
Query: 121 agagaggaagaatgccactgacccaacccaactaaacacccagaacttaaggtatttgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagaggaagaatgccactgacccaacccaactaaacacccagaacttaaggtatttgct 380
Query: 181 gggttgccccagggaccttattaaatcacaggcaggctgcagccatgctaacaactggac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggttgccccagggaccttattaaatcacaggcaggctgcagccatgctaacaactggac 440
Query: 241 actaaatgcctgctctgcagtagctagagactctgcatggacaggactatggaagtgata 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 actaaatgcctgctctgcagtagctagagactctgcatggacaagactatggaagtgata 500
Query: 301 gggaagaggggatatgacactgagggatgctgggagc 337
||||||||||||||||| |||||||||||||||||||
Sbjct: 501 gggaagaggggatatgatactgagggatgctgggagc 537
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space: 238784
Effective search space used: 238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no419_m17.g1 MSMg01no419_m17.g1 CHROMAT_FILE:
MSMg01no419_m17.g1 PHD_FILE: MSMg01no419_m17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:26 2005
(520 letters)
>mm_chr7_118310839_118311757
Length = 919
Score = 967 bits (500), Expect = 0.0
Identities = 515/520 (99%), Gaps = 1/520 (0%)
Strand = Plus / Plus
Query: 1 tctggagctggagttataaaggcagttgtgagctgttcgatgtgggtgctgggaactgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctggagctggagttataaaggcagttgtgagctgttcgatgtgggtgctgggaactgaa 260
Query: 61 ctcaggacctctgcaagagtggtcagcgctcttaaccactgggccacccacctctctagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcaggacctctgcaagagtggtcagcgctcttaaccactgggccacccacctctctagt 320
Query: 121 cccactttttacttttaaaaattcatcttaaattttttgatataataaataatcctgtga 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccactttttacttttcaaaattcatcttaaattttttgatataataaataatcctgtga 380
Query: 181 caaatatttcagcttccatgtatctctgtggttttagtttttttcttgggatagatcccc 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaatatttcagcttccat-tatctctgtggttttagtttttttcttgggatagatcccc 439
Query: 241 agttgtggttttattgaagctttttctttttcacagtatgtttttcagagagattaaaga 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 440 agttgtggttttattgaagctttttctttttcacagtctgtttttcagagagattaaaga 499
Query: 301 gatgttagaatccctagacgtatgttaccatcattttactagagttccactgctctgaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gatgttagaatccctagacgtatgttaccatcattttactagagttccactgctctgaat 559
Query: 361 aaggcagcaacatcataaactacacctctgccaatcacacagatgggatttttatctttt 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 560 aaggcagcaacatcataaactacacctctgccaatcacgcagatgggatttttatctttt 619
Query: 421 ttgttttagtttgcatacatttgtttacaaagattttcctgggcttgtttttgaactagc 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 620 ttgttttagtttgcatacatttgtttacaaagattttcgtgggcttgtttttgaactagc 679
Query: 481 tataattctttgatgaaatattgatgaatgcctttcactc 520
||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tataattctttgatgaaatattgatgaatgcctttcactc 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 919
Length adjustment: 10
Effective length of query: 510
Effective length of database: 909
Effective search space: 463590
Effective search space used: 463590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
