BAC Information

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BAC

Clone NameMSMg01-420M16
Chromosome17 (Build37)
Map Location 35,877,896 - 35,878,142
singlet/doubletsinglet
Overlap genenone
Upstream geneC4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663
Downstream geneIer3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420M16.T7 (MSMg01no420_m16.b1)MSMg01-420M16.TJ (MSMg01no420_m16.g1)
ACCAG515572AG515573
length970747
length of high quality
(start - end)
---247 (316 - 562)
definitionCHROMAT_FILE: MSMg01no420_m16.b1 PHD_FILE: MSMg01no420_m16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:44 2005CHROMAT_FILE: MSMg01no420_m16.g1 PHD_FILE: MSMg01no420_m16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCCAAAACAAAAAGTTTGGGGGTCGTTAAAANGGAATCTTTACCTACAA
AGAAGCAGGGCGNNGNNANNNCTTGTATTTTACCCAAAAGAAAGGTNGGA
TCCAAGGGGGGGGAACCCACAGGCCCAAGTCCGGAAATATAGAAGGGCTT
TTTAACCTCGAAAGGAAGAAAAAGGAAAACCGTAAGGGTCCCTTGCCGAG
GGGACCAATTTTAAACTTTAAAAGGGCCGCGCCCCCACGGAATGGCGCCA
AAAACGTTCGGGCAAAGGGTCCCCTCCCCCAAAATTCAAACGGAAAAGAG
ATAGGGAGTGCTTGGGACTTAACATCACGGGCCCCACGGGGCCGAAAGAG
CCCAAATTAATGGGGGGGTCCCGGTACAAGCCCGGGCCCGGAGTTTCTTT
TTTTTTTTTTTCAACCCAACATCCGGGAAAAAACACCCACTATATCCGTT
CTGGGTATACTCACTCGGGGAAAACCGCGAGACTATCTAACACCACGCAT
ACTCCCCCGCGGGAAAAAGGGCGCGGGTGAACACGGGAGACCCACTAAAT
AACACAATATCCCCCCCCTGGGAAACCAAAGCGTCCGGGTGTTTTCTCTC
CTTACACCGCGCACATAAAACCCCCCCTCCTTCAACAAAGAGCTGTGAAG
GTGTTTCGCAAGTGTTACGAACACAACCCCTCCCGCGCCCCTTTTAAAAG
AGCAATTCTCCCACATAAAAACCTCTCTCTTCCCCTCGACTTACCACGGA
TCGTTCTGAACAAAAATAAGAGTGGTGGGGTGAGAGAAAGAAAAAACCAC
CTCCGGGCGCCGCAAAAATAGGAAACTGCCACAAGATCCTTTTCTCTCCC
TTCCATCACAGGCGTTTCCAGAAAAAACAACGAGGGCGTCGGAGGAGTAG
AACACACCCCCCTCGCCCGCAACAATTGAACCCCTTAGCGGCTTTTTTCC
CCCTCCGCCTACGGGTTTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXAGTGGCATTTCTGAGAAGCAGGTTCCCACCTCGGTCTT
CTTCCTTTTTTTTTTTTTTTAAACAAGGGTCTAGGGTCTCATGTAGCCCA
GGCTCATCATATAACCAGTCTGCCTCTACTTCCTAGGTGCTGAGATCACA
GGTAAAGGCCACCAAGCCCATGCACATCCTGTAGACACACTCTGCGTGTG
TGTGGATGGTAGAGTGGAAAAAATATTCAATTCATTGGATTCTCAAATCC
CAACAGTAGTAATTCGAGCCTTCCCTCTCCTCAAGACCTCGTGTGCTGGA
TTTACAGGTTTCTCTCCTATTGACACCTGTGCTAAAGCTTCACCCAGAAG
GGGGCAGAGAGCACCCTTCCCACCTTAACCACAAAGATTCCTGCTTAACC
TTCCCAAGGGTGGTGGGCCATCCTGCGGTGGTTAGCATTAACTGACAACT
AGGCACAAGCTAGAGTCACCTGGGAGGAGAGCTTAAGTGAGGGACTGCTT
AGGTCAGGGTGCCTGGTAGGCATGTTTGTGGGAGATGATCTTGATTATGA
GGAGAGAAAACCTGCCCAATATGGGCCACACCATTTCCTAGGTAGATATC
CTGGACTGCCTCTGCCCACTATAGGCCATACCATTTCCTAGGTAGAGAAT
CTGGACTGGTTTTGCCCACTATAGGCTCATACATTTCCCTAGTCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_m16.g1 MSMg01no420_m16.g1 CHROMAT_FILE:
MSMg01no420_m16.g1 PHD_FILE: MSMg01no420_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:45 2005
         (247 letters)



>mm_chr17_35877696_35878342
          Length = 647

 Score =  462 bits (239), Expect = e-135
 Identities = 245/247 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagccttccctctcctcaagacctcgtgtgctggatttacaggtttctctcctattgaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagccttccctctcctcaagacctcgtgtgctggatttacaggtttctctcctattgaca 260

                                                                       
Query: 61  cctgtgctaaagcttcacccagaagggggcagagagcacccttcccaccttaaccacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 cctgtgctaaagcttcacccagaagggggcagagagcacccttcccaccttaaccgcaaa 320

                                                                       
Query: 121 gattcctgcttaaccttcccaagggtggtgggccatcctgcggtggttagcattaactga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattcctgcttaaccttcccaagggtggtgggccatcctgcggtggttagcattaactga 380

                                                                       
Query: 181 caactaggcacaagctagagtcacctgggaggagagcttaagtgagggactgcttaggtc 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caactgggcacaagctagagtcacctgggaggagagcttaagtgagggactgcttaggtc 440

                  
Query: 241 agggtgc 247
           |||||||
Sbjct: 441 agggtgc 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)