Query= MSMg01no421_d20.b1 MSMg01no421_d20.b1 CHROMAT_FILE:
MSMg01no421_d20.b1 PHD_FILE: MSMg01no421_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:21 2005
(547 letters)
>mm_chr17_64482943_64483886
Length = 944
Score = 1019 bits (527), Expect = 0.0
Identities = 541/549 (98%), Gaps = 7/549 (1%)
Strand = Plus / Plus
Query: 1 tacatgcgatgttgctgtggctctggcccattggtttgaatgtcttgtaactggtctagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacatgcgatgttgctgtggctctggcccattggtttgaatgtcttgtaactggtctagt 260
Query: 61 aatctcatctaaggttaaactgtcagtcaagactccaggatcttgggctcagcctctgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatctcatctaaggttaaactgtcagtcaagactccaggatcttgggctcagcctctgga 320
Query: 121 acttatataaatcttgaccaaagagagagttgggtattgctttttataagagcaggaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttatataaatcttgaccaaagagagagttgggtattgctttttataagagcaggaatt 380
Query: 181 tcttttttccactgaaattttttaaaatatctctatcctaagaaactcagaagacaatgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttttttccactgaaattttttaaaatatctctatcctaagaaactcagaagacaatgc 440
Query: 241 atgggagtcagtgcatgttaccacagttgttagatgtatggttagtgctgtgttttctgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgggagtcagtgcatgttaccacagttgttagatgtatggttagtgctgtgttttctgc 500
Query: 301 acccaggaacccatctttcaagtataactttca--agtttaacttcttgaggatctatcg 358
||||||||||||||||||||||||||| | |||||||||||||||||| ||||||
Sbjct: 501 acccaggaacccatctttcaagtataa-----agtagtttaacttcttgaggagctatcg 555
Query: 359 aacttttttctaagtaaagatctgagtgtatgcaattggcttgttgaggctgagtcagat 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aacttttttctaagtaaagatctgagtgtatgcaattggcttgttgaggctgagtcagat 615
Query: 419 gcctcctgccagcaagaggggcttttgtgagctttctagtgattgtaaaccaacctaggg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gcctcctgccagcaagaggggcttttgtgagctttctagtgattgtaaaccaacctaggg 675
Query: 479 ttcagtggaatccccatcatctcccacaggattcttctctgaagtgggtgctactcctta 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ttcagtggaatccccatcatctcccacaggattcttctctgaagtgggtgctactcctta 735
Query: 539 tgggctgta 547
|||||||||
Sbjct: 736 tgggctgta 744
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 944
Length adjustment: 10
Effective length of query: 537
Effective length of database: 934
Effective search space: 501558
Effective search space used: 501558
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_d20.g1 MSMg01no421_d20.g1 CHROMAT_FILE:
MSMg01no421_d20.g1 PHD_FILE: MSMg01no421_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:21 2005
(523 letters)
>mm_chr17_64626961_64627883
Length = 923
Score = 984 bits (509), Expect = 0.0
Identities = 518/521 (99%)
Strand = Plus / Minus
Query: 3 tcttagtacctgacgctcagggccttagaggatgctgtgtggttactgaagctagaatca 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tcttagtacctgacgctcagggccttagaggatgctgtgtggttactgaagctagaatca 664
Query: 63 accgaaggaaggagaaagcttgagttgctgtttcctacaggggccgttagctaccagaga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 accgaaggaaggagaaagcttgagttgctgtttcctacaggggccgttagctaccagaga 604
Query: 123 gtacctgaagctaaaagaaccattgctgggctgggggtctctaggaagttctttcccact 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gtacctgaagctaaaagaaccattgctgggctgggggtctctaggaagttctttcccact 544
Query: 183 tccctttgctctaagacattctcacataagcctccactacagtctcaccccaaatggaac 242
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 543 tccctttgctctaagacattctcacataagcctccaccacagtctcaccccaaatggaac 484
Query: 243 ataaaccagacggctctgaagcacggccggcagaacactctggcgggaaatgaagcgtaa 302
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 483 ataaaccagacggctctgaagcacggctggcagaacactctggcgggaaatgaagcgtaa 424
Query: 303 gttttggtgaccccaaacacagcagttcactgcagacggccttccctaaaggcttcacaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gttttggtgaccccaaacacagcagttcactgcagacggccttccctaaaggcttcacaa 364
Query: 363 ggagtaaacaccagtgaaattgctagacttccttcctgtggctctcacagcctctgaaga 422
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ggagtaaacaccaatgaaattgctagacttccttcctgtggctctcacagcctctgaaga 304
Query: 423 agttacatgaacacacactgagccccagaggaatgaagtgctgtacagtgcgtagttatg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 agttacatgaacacacactgagccccagaggaatgaagtgctgtacagtgcgtagttatg 244
Query: 483 ctaggacagctcctccctgcatcagcttgtgcatcactcag 523
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ctaggacagctcctccctgcatcagcttgtgcatcactcag 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
