BAC Information

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BAC

Clone NameMSMg01-422H14
Chromosome17 (Build37)
Map Location 8,125,282 - 8,125,464
singlet/doubletsinglet
Overlap geneTagap
Upstream geneRshl2b, Tagap1, Rnaset2b, Gm1604, Rps6ka2, LOC625031, Tcp10b, LOC100038857, LOC667055, 5830477G23Rik, LOC625102, Fndc1, EG634588, LOC100040748, LOC100040760, LOC667102
Downstream geneRshl2a, LOC100040822, Rnaset2a, Fgfr1op, Ccr6, LOC667114, Brp44l, Sft2d1, LOC100038858, 9630019K15Rik, EG435502, LOC433063, T2, T, LOC100040817, Pde10a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422H14.T7 (MSMg01no422_h14.b1)MSMg01-422H14.TJ (MSMg01no422_h14.g1)
ACCAG516854AG516855
length741737
length of high quality
(start - end)
181 (348 - 528)44 (267 - 310)
definitionCHROMAT_FILE: MSMg01no422_h14.b1 PHD_FILE: MSMg01no422_h14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:55 2005CHROMAT_FILE: MSMg01no422_h14.g1 PHD_FILE: MSMg01no422_h14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:56 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TCATTGTCCCCTGCTTTGAGATATTTGGCGAGAACATTCGGACACGTTCC
CGCATCACTTCTGACGACTCCCTGGAACACACTGACAGTTCAGGTACAGA
ACATTCTCACTTGAGTGTGGTTCTGGAGAGAAGTTCGTGCCGGCCATAGG
TGCTCCATGCAGCAATGTGAAGCATCCCTGGGATTAACAGCAGGATTCAC
CTTCAGCAAGACAGAATTCTGTAAGGAAGTCACCAACCACAGAGGTCTTG
CTATTAGATATACTTATTTTCTCACACACACACACACACACACACACACA
CACACACACACACACACACACACACACCAGACACAATCTGGAATTTTTTC
CTTTTCATTCTGAGTCATGAATAGCTCTTGATTCTATTAAGTAAACTCCA
GCTATGGGTTGGAGTAAGGAAATCCCAGCTCTGCAAAGGAATGTGAGTCC
ATCAAAATGGACATTGAGCCTATATAANAGCTACCTGAAAAACCTATGTT
ACAAATTCAGATCAATAGACCATAGAGAATATTATCATTGTCCAGTTTCT
TTTCCTCGAAACTTTCCCTTCCTTCTTCATTTTAATTTTTCCCACCTTTC
TTACCACTTTATAGACCCATTTTAAACACAAGCCAAATTTTCATGGTAAT
CACCTTTCTTGTTGGAATTATGTCCCCACTATCACTTTCTC
CTGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATAAACTCAAAGCCTCTAGTTCTTGCCATTCAT
GACGTATGTCCCCAGGCATCTGTCCCCTGGGCTACTGTCCCTGGGCTTCT
GTCCCCTACGCTACTGTCCCCAGGGATCTATCCCCTGGGCTACTGTCCCC
TGGGCTACTGTCCCTGGACTGTCCTTTCTCACTTGACCGCTGTTGCCCAT
CGTATAAAGAGGAGGCTTGCAACCCTGTTCAGCCTGACATCGTTATCTTT
CTGCTTTTATATCTTTTTAGACGCCGCACGATCCCAGAATGAGCATATAG
CCACCGTGCAGCCAGTCACCAGGGCTCTCAGACTGAAAAGGGACTCCTAA
AGCTGGAGAGTTTTGTGATCTGGATCTATGAGAGATCCGGATAGATCTGT
TAACATCGATTTCTCGCTGTACTCATGTGGACACTCGACGTTACGATGTC
CAGCTGGTTCCATCACAACCGCGTTGATACCTAGGTGCTGACTGCATCCC
CAGAGCCTCATGGCTCAGGCGCCAGAAAGCTGTATCTCCTGGGTCGCGTC
GCACCCAATGTCCTGTAATTCCTCACAGGCCCGTATTTTTGAAAAATCAT
TTTTTTTCTTCCATCCCACCCTGGCAAAAATATTTTTTTTAATATTGGAG
CTATTCTATCCCCATATGTTTTGATGACATGAAGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_h14.b1 MSMg01no422_h14.b1 CHROMAT_FILE:
MSMg01no422_h14.b1 PHD_FILE: MSMg01no422_h14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:55 2005
         (181 letters)



>mm_chr17_8125085_8125665
          Length = 581

 Score =  339 bits (175), Expect = 9e-98
 Identities = 180/183 (98%), Gaps = 3/183 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   acacacacacacacacacacacacac---acaccagacacaatctggaattttttccttt 57
           ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||
Sbjct: 198 acacacacacacacacacacacacaccagacaccagacacaatctggaattttttccttt 257

                                                                       
Query: 58  tcattctgagtcatgaatagctcttgattctattaagtaaactccagctatgggttggag 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tcattctgagtcatgaatagctcttgattctattaagtaaactccagctatgggttggag 317

                                                                       
Query: 118 taaggaaatcccagctctgcaaaggaatgtgagtccatcaaaatggacattgagcctata 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 taaggaaatcccagctctgcaaaggaatgtgagtccatcaaaatggacattgagcctata 377

              
Query: 178 taa 180
           |||
Sbjct: 378 taa 380


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 581
Length adjustment: 8
Effective length of query: 173
Effective length of database: 573
Effective search space:    99129
Effective search space used:    99129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)