BAC Information

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BAC

Clone NameMSMg01-423N10
Chromosome17 (Build37)
Map Location 74,392,334 - 74,392,771
singlet/doubletsinglet
Overlap geneSrd5a2
Upstream geneLycat, LOC668709, Capn13, LOC100043666, Galnt14, Ehd3, LOC240160, Xdh
Downstream geneMemo1, EG668716, 2810410M20Rik, LOC668773, LOC668775, Spast, Slc30a6, Nlrc4, LOC100043883, LOC624159, Yipf4, Birc6, Ttc27, LOC100043672
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423N10.T7 (MSMg01no423_n10.b1)MSMg01-423N10.TJ (MSMg01no423_n10.g1)
ACCAG517900AG517901
length782759
length of high quality
(start - end)
287 (60 - 346)440 (63 - 502)
definitionCHROMAT_FILE: MSMg01no423_n10.b1 PHD_FILE: MSMg01no423_n10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:37 2005CHROMAT_FILE: MSMg01no423_n10.g1 PHD_FILE: MSMg01no423_n10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGTCGCTTTACGATTCCTATTCACAGAGGATCCGCGGAATTCTTCCTTC
CCCTTTTAATCTGTTGACAAGGCTTACCTCTGAGTCTTTTGTTTGATATC
CTGAGTTTTCCATTTCCAGATTTATTTTTCAGTTTGGGTTTCCTTTAGTG
AATCCGTTTCTATGCTAAATTCTGCTTTCATGACTTGAATTGCTTTTATC
ATGTCATTCAACTGTTTATCTTTTCATGATTTTCACTAATACAGTCATTC
GTAGCCTCTTTAAGGTCTTTGACCATATTTATAATTGCTTCTTTTTTCTT
TTTATTTTATTCCTTATCTGTGCTTCAGCTAAATTGCTTTTCTCAGAGTC
TATGGCAACAGGGTTGCTGGCTTCTGAAGATGGGTTGAAAGGAAAGGCTG
AAGGCGCATCAGGCAAGAACTATGGGATCCCAGGTCCACATCAAAATGCC
ATTAGCCTACGGCTTGAATTTGAGCCTGGAGGAGGAGTTTAGACTTATCC
GGACTTCTCATCGTATTAACCTGCTCATGTCTTTGAGAAGCGAAGACTAT
GTTTTACTCTTTCTGTACCTTTCTAGACATGGCGGTCTTAATATTTTCCC
CCTTTTTCTTTATGAATATTTTCCTTACTTTCCCCTATAAAACCTTTTCC
ACCCCCTCTAATCTTCATCCCCTTTCTTCCTTTGCCATCCTTTCCCTCAT
TACTTCTCCCACTTTTTTCTTCCCTTCCCCTCTTCTAATTTATTTATTCC
TTTATCTCCCTTCTTTTTTCTCCCCTAATTTN
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCAAGAGATTCGAGACGGTTTCCCCAGTCAGCTAAGTAA
TAAAATCTTTAATAAAGTCCTTGTTGCTTTTTCCACTGATTCCCCGGCAG
TGCAAATGTCTCTTTGACGAGAGACTCAGGCTAAGCATTATTTCTTCCAA
GAAGCTGCCACTGAACCACTATTTGCCTGTGACCCTATTCTGACTCTTCC
CAAAGGCCCTTTGCACATGGATTAAAATCTATCCTAAGAAGACTTAGTCC
TCATCTCTCTAACTCTCAGAACCCCCGCCTCTGCTTCCTAACATCTACCT
TTTACAGCAGCCATGCACCAGGGGTTGAGCTGCCGAGCAGCAAAGTGAGG
TTTTGACCCGAGTCTTCCTGGTTATGTCAGTGGGTCACTTGTCATCTGTG
AGGTGCAGAGGGTCTCGGTGTTCAGAAGCAGGCAGCCTAAGGAGACTTTT
CACCGGCTGAGAATCAGTGAAGATGAATGCCTAATTGATGATAATAGACA
AATCCCCGTTCTTCCAGATTAAGGAGATGCAAATGAGATAAGCATGTTCT
TTGGTAGATGCTGACAAAATTTATCACCCGTAACATTTCCTAGCTCACTT
TTTTTGCAAGTATATTTTCCACGAGTACTCTCCCAAATTTTTTTTATTCT
CATTCCCCCATTTTTTAAATCGAATCTTTATGTTGATTTTTTTTTCCGCC
CCCCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_n10.g1 MSMg01no423_n10.g1 CHROMAT_FILE:
MSMg01no423_n10.g1 PHD_FILE: MSMg01no423_n10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:37 2005
         (440 letters)



>mm_chr17_74392134_74392973
          Length = 840

 Score =  777 bits (402), Expect = 0.0
 Identities = 429/438 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagagattcgagacggtttccccagtcagctaagtaataaaatctttaataaagtcctt 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 caagagattcgagatggtttccccagtcagctaagtaataaaatctttaataaagtcctt 579

                                                                       
Query: 61  gttgctttttccactgattccccggcagtgcaaatgtctctttgacgagagactcaggct 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 578 gttgctttttccactgattccccggcagtgcaaatgtctctttgatgagagactcaggct 519

                                                                       
Query: 121 aagcattatttcttccaagaagctgccactgaaccactatttgcctgtgaccctattctg 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 518 aagcattatttcttccaagaagctgcaactgaaccactatttgcctgtgaccctattctg 459

                                                                       
Query: 181 actcttcccaaaggccctttgcacatggattaaaatctatcctaagaagacttagtcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 actcttcccaaaggccctttgcacatggattaaaatctatcctaagaagacttagtcctc 399

                                                                       
Query: 241 atctctctaactctcagaacccccgcctctgcttcctaacatctaccttttacagcagcc 300
           |||| || ||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 398 atctttccaactctcagaacccctgcctctgcttcctaacatctacgttttacagcagcc 339

                                                                       
Query: 301 atgcaccaggggttgagctgccgagcagcaaagtgaggttttgacccgagtcttcctggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 338 atgcaccaggggttgagctgccgagcagcaaagtgaggttttgacccgagtcttcctggc 279

                                                                       
Query: 361 tatgtcagtgggtcacttgtcatctgtgaggtgcagagggtctcggtgttcagaagcagg 420
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 278 tatgtcagtgggtcacttgtcatctgtgaggtgcagagggtcttggtgttcagaagcagg 219

                             
Query: 421 cagcctaaggagactttt 438
           ||||||||||||||||||
Sbjct: 218 cagcctaaggagactttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)