BAC Information

Click to search

BAC

Clone NameMSMg01-424D20
Chromosome17 (Build37)
Map Location 35,029,654 - 35,030,121
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2
Downstream geneZbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424D20.T7 (MSMg01no424_d20.b1)MSMg01-424D20.TJ (MSMg01no424_d20.g1)
ACCAG518207AG518208
length742760
length of high quality
(start - end)
577 (64 - 640)499 (73 - 571)
definitionCHROMAT_FILE: MSMg01no424_d20.b1 PHD_FILE: MSMg01no424_d20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:09 2005CHROMAT_FILE: MSMg01no424_d20.g1 PHD_FILE: MSMg01no424_d20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTATTACATTACCTATTCAGTAACATTCAAATTCTCTTCTAGTAT
AGACAGTGAAAGTAATTAGGCATTATAATTTACTCGAACAAAGCTAGAAA
AGCTCATGGCTAGTCTGCATAGTAATTACTTAGGACAATAGCCGAGTCAC
ACCCAAACACAGGAATACACAATGACCTAGGAAATAGGTGGGTTGTCCCA
TGAAAGGGTTAGTAGAAGGGAATTCCCCTGGTGCAGATTTTTTCACTAGA
CCCAGAGGAATAGCATAATCAGGTATTTAATAAAGAACCCCTGGTGGTGG
GTTTAATAATAGATTAGCATTGCATCAGAGGATTCACCTGGCTCCTGTGT
TTAGCTGATCTTTTTAATTAAGGGTTGTTCCTATTTTCAATGGTAAACGC
GGCCTGGATCCTGCCATCTTTTTATGTATGCATTCTTTTTGTTTTGTGTC
AATGTAACTTGGCAGATGTGTTCACCTGGCTTTCTTGGTTTTCTTCTGTA
TTAAAAGTACAGTGTTCCTTTGGACAAATTACATTCAGATTTAGCACTCC
CTTGTGTCTGCAACTATTTGTCAGTTCTCACTGACTCTTTGCCCATCTGT
CTGAAACCCTGATTCCACACAGATTGAGAGAGGCCGACTGGGCCAAACAG
GGACTTCAGGGCAGGTAAGACTTTATCTTTTTTCTTTTCCTT
AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTGACTTGTACCCTCACCCAGCTCACT
TTGTGGTCAGGTCGTGGATTTTAGGGGGAGTGTAGGCCATTGTGTCTGGT
ACACCTTGTTTAAAGCCACATTCACTGCCTACTGCACTAGAGTGAAGCCT
TGGGCAAATCAGTTCTCTGAATCAAGATGTCTTTATCTTTGAACTCAAGG
TTCTGAATGCTTACCAGGCTGATAGAGGGTTCTAGGGAGCCTCTTATACA
CTGAACAAACAAACACACACTGTATCTGTGGTATCACTGGTTTTTAATTT
ATTTATTCATTTATTTTTAGTGTCTTTGCTTTTATGAGAAATAGACTCTG
GCAGTTTCTTTGTTTTCTTCTTTCTTTCATCCTTTCTTTCCTTTTTTTTT
TTTTTTTTTTTTAAGCCCTGGCTATACTGAAATTCACTCTATAGACCAGC
CTGGCCTTGAACTCAAACATCTGCCTGCCTTCCCCACTGCCTCTCTCAAG
TCCTGGAATAGTCATGCCTCATCACCACTATGACAGTTTCAAAAGAATTT
TCCTTTAAAAATTCTGTTCTCTTATCTCATTTTTTTCTTTTTCTCCCTTA
CAAACTTTTTTGTTGTTGATTTGCTTTTTGTTTCTGTCTTTCGTTGTTTT
ATTTTAACCCTTTTCTTTTTCGCTTTCCTCCTCTTTTTCCTCCATTTTTT
CCTCTTCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_d20.g1 MSMg01no424_d20.g1 CHROMAT_FILE:
MSMg01no424_d20.g1 PHD_FILE: MSMg01no424_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:09 2005
         (499 letters)



>mm_chr17_35029654_35030552
          Length = 899

 Score =  874 bits (452), Expect = 0.0
 Identities = 465/470 (98%), Gaps = 2/470 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgacttgtaccctcacccagctcactttgtggtcaggtcgtggattttagggggagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tctgacttgtaccctcacccagctcactttgtggtcaggtcgtggattttagggggagtg 409

                                                                       
Query: 61  taggccattgtgtctggtacaccttgtttaaagccacattcactgcctactgcactagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 taggccattgtgtctggtacaccttgtttaaagccacattcactgcctactgcactagag 349

                                                                       
Query: 121 tgaagccttgggcaaatcagttctctgaatcaagatgtctttatctttgaactcaaggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tgaagccttgggcaaatcagttctctgaatcaagatgtctttatctttgaactcaaggtt 289

                                                                       
Query: 181 ctgaatgcttaccaggctgatagagggttctagggagcctcttatacactgaacaaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ctgaatgcttaccaggctgatagagggttctagggagcctcttatacactgaacaaacaa 229

                                                                       
Query: 241 acacacactgtatctgtggtatcactggtttttaatttatttattcatttatttttagtg 300
           |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 228 acacacactggatctgtggtaacactggtttttaatttatttattcatttatttttagtg 169

                                                                       
Query: 301 tctttgcttttatgagaaatagactctggcagtttctttgttttcttctttctttcatcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 tctttgcttttatgagaaatagactctggcagtttctttgttttcttctttctttcatcc 109

                                                                       
Query: 361 tttctttcctttttttttttttttttttttaagccctggctatactgaaattcactctat 420
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 108 tttctttcctttttttttttttttttttt--agccctggctatactgaaattcactctat 51

                                                             
Query: 421 agaccagcctggccttgaactcaaacatctgcctgccttccccactgcct 470
           ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 50  agaccagcctggccttgaactcagacatctgcctgccttccccactgcct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)