BAC Information

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BAC

Clone NameMSMg01-424L19
Chromosome17 (Build37)
Map Location 38,599,109 - 38,599,619
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123, Olfr124, Olfr125, LOC672822, Olfr126, Olfr127, Olfr128, Ppia-ps17_697.1, Olfr761, Olfr1552-ps1, LOC100043265, Olfr129, Olfr130, Olfr131, Olfr132, Olfr133, Olfr134, Olfr135, Olfr138, Olfr137, Olfr762-ps1, Olfr136
Downstream geneLOC626985, LOC100043297
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424L19.T7 (MSMg01no424_l19.b1)MSMg01-424L19.TJ (MSMg01no424_l19.g1)
ACCAG518586AG518587
length724759
length of high quality
(start - end)
501 (51 - 551)521 (77 - 597)
definitionCHROMAT_FILE: MSMg01no424_l19.b1 PHD_FILE: MSMg01no424_l19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:46 2005CHROMAT_FILE: MSMg01no424_l19.g1 PHD_FILE: MSMg01no424_l19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:46 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CCGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATTGTTTCCCAATTTCGGAGTAGTACTCCATTGTGTAAAT
ATACCACATTTTCTGTATCCACTCCTCTATAGAGGTACATCTGGGTTCTT
TCCAGCTTCTGGATATTATAAATAAGGCTGCTACAAACATACTGGAGCAT
GTGTCTTTATTACAAGTTGGAAAATCTTCTGGGTATATTCCCAGGAGAGG
AATTTCTGGATCTTCCAGTAGTACTATGTCCAATTTTCTGAGGAAATGCC
AGACTGATTTCCAGAGTGTTTGTACCAGCTTGCAATCCCACCAACAATGG
AGGAGTGTCCCTCTTTTACCACATCCTCACCAGCATCTGCTGTCACCTGA
ATTTTTGATCTTAACCATTCTGACTGGTGTGAGGTAGAATTTCAGAGTTG
TTTTGTTTTGCATTGCTCTGATGATTAAGGATGTTGAACATTTTTTTCAG
GTGCTTTTCAGCCATTCGGCATAGAATATTTTTTTTATTATTATACATGA
TTGGTGTAGCAATTTTGGGACATTTGCTTCTCTATATGAAGTTGAGTATT
ATTCTTTTAAGGTCTGTAAAGAATTAAGCGGAATTTTTATGCGGAATGTG
CTGATTCTGGACAATGCTGTTGGTAATTGGTCCCTTTACTACGTTAATCC
CAACAATCCATGAACATGCATGAT
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATAGAAAAATCTGTTTCAGCAAA
TCAGGTGAAATAAGTCAGTAAACAGCACCTTTCTATGGTTTCTGCATCAG
CTCCTGCCTGCAGGGACCTACTATGGATTGTTTCTTTCCTGACTTCTTTA
GTTGATGATCAGCAATATAAAAGTGTAAACCTAATACATTCTATTAACTG
CAACTTGTTTTTGTTTCCTTTTTTTCTTTTTTTTGTTATTTTTTTGTCAT
TTTTCATTGTAGAACTGAAACAAGTTATGATGAAGAGTTTGGAGTATTGT
TGAGACAGAACAGTGTGTTTTAGGTAGGATTTTGGAATTTGGCGTTAGAA
AGGAATTGAGGGTGGAGAGTTCAGTGTGTTATTCTCCTGAAGTTTGAAAG
ATAATCATGGTTAAAGGGAAGTATGGTTAAATGCAGTCTCCTGGATGGAG
GCCTCCATTATGAACTTTCTGAGGGAAATTTAAAGGCTCTATATTACTTT
TTAATTCGAGGTTCTGTCATTAAGGTGTTTGTTGCTGAAAAAACAGCTGT
GATTAACAAGACACCAGAAACACTAAAAGGACACCTTTGATTTTCTGGAA
CACTCAATGCTGGTCACATAGATCTGAGAAATTATTTGTGATTAAGAAGA
GACTTATCCCCTGGGTGCGGCGGTACATGCCTTTAATCCCTGCACTCCAG
AAGTAGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_l19.g1 MSMg01no424_l19.g1 CHROMAT_FILE:
MSMg01no424_l19.g1 PHD_FILE: MSMg01no424_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:46 2005
         (521 letters)



>mm_chr17_38598716_38599638
          Length = 923

 Score =  864 bits (447), Expect = 0.0
 Identities = 496/513 (96%), Gaps = 5/513 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatagaaaaatctgtttcagcaaatcaggtgaaataagtcagtaaacagcacctttctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 tatagaaaaatctgtttcagcaaatcaggtgaaataagtcagtaaacagcacctttctat 845

                                                                       
Query: 61  ggtttctgcatcagctcctgcctgcagggacctactatggattgtttctttcctgacttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 ggtttctgcatcagctcctgcctgcagggacctactatggattgtttctttcctgacttc 785

                                                                       
Query: 121 tttagttgatgatcagcaatataaaagtgtaaacctaatacattctattaactgcaactt 180
           ||||| ||||||||||||||||| |||||||||||||||| ||||| |||||||||||||
Sbjct: 784 tttagatgatgatcagcaatatacaagtgtaaacctaataaattcttttaactgcaactt 725

                                                                       
Query: 181 gtttttgtttcctttttttcttttttttgtta-tttttttgtcatttttcattgtagaac 239
           |||||||||| | ||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 724 gtttttgttttc-ttttttc-tttttttgttattttttttgtcatttttcattgtagaac 667

                                                                       
Query: 240 tgaaacaagttatgatgaagagtttggagtattgttgagacagaac--agtgtgttttag 297
           |||||||||||| |||||||||||||||||||||| ||||||||||  || |||||||||
Sbjct: 666 tgaaacaagttaggatgaagagtttggagtattgtcgagacagaacagagggtgttttag 607

                                                                       
Query: 298 gtaggattttggaatttggcgttagaaaggaattgagggtggagagttcagtgtgttatt 357
           ||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 606 gtaggattttggaatttggggttagaaagtaattgagagtggagagttcagtgtgttatt 547

                                                                       
Query: 358 ctcctgaagtttgaaagataatcatggttaaagggaagtatggttaaatgcagtctcctg 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ctcctgaagtttgaaagataatcatggttaaagggaagtatggttaaatgcagtctcctg 487

                                                                       
Query: 418 gatggaggcctccattatgaactttctgagggaaatttaaaggctctatattacttttta 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gatggaggcctccattatgaactttctgagggaaatttaaaggctctatattacttttta 427

                                            
Query: 478 attcgaggttctgtcattaaggtgtttgttgct 510
           ||||||||||||||||||||| |||||||||||
Sbjct: 426 attcgaggttctgtcattaagttgtttgttgct 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 923
Length adjustment: 10
Effective length of query: 511
Effective length of database: 913
Effective search space:   466543
Effective search space used:   466543
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)