BAC Information

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BAC

Clone NameMSMg01-424M09
Chromosome17 (Build37)
Map Location 70,985,115 - 70,985,231
singlet/doubletsinglet
Overlap geneDlgap1
Upstream geneLOC100043630, LOC623112, LOC623143
Downstream geneTgif1, LOC668724, LOC546695, LOC240156, Mylc2b, 2900073G15Rik, Myom1, Lpin2, Emilin2, LOC100043644, Smchd1, LOC100043879, Ndc80, LOC668740, Spdya, LOC623451, Wdr43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424M09.T7 (MSMg01no424_m09.b1)MSMg01-424M09.TJ (MSMg01no424_m09.g1)
ACCAG518614AG518615
length735740
length of high quality
(start - end)
305 (323 - 627)116 (113 - 228)
definitionCHROMAT_FILE: MSMg01no424_m09.b1 PHD_FILE: MSMg01no424_m09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:48 2005CHROMAT_FILE: MSMg01no424_m09.g1 PHD_FILE: MSMg01no424_m09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAACACGATCCGCGGA
ATTCTCATCTTCCGGATACATGGAAAGCAAGTTTAGGATGTTTCACCCTA
AACAAACTATCATTAAAGATGCTCTACCAAGAAAGCAATGGATTAAAACC
CTCCCGTTAAAAAAATGCATACTAATCTAAAATGTATCAAGTAGATATAA
ACGTGAGACGTTGTCACCTGTGCCCTGCACTACTAACCCTACCTGCCCTT
GGGGGTTGGAAGTGAGGTGGCACAGAGTCCATGGCACAGACACCAGGAGC
AGGTGAGAGACTCGGTGCATGCTTGTCTGGACAGGACTGAAAGCTCCTTT
AATACCCTCTACCTGCACCCTATTGGTCCCAAGAAGCATCTCTTTTAAAC
GGCAGTTTCTGATTGGCTGGCATTGTCTGCACCAGCAATCCTTGGGCTCT
CAGGCAGTCCTCAATTAGGTTCTCCTGCCAGGGATGGTTTTGTGGCTTTG
AGCGGTTACAGAGAGCCCCCACCCCACCAGCACCATCCCACTGTTCCTGC
TACAATAGTGTCTCTTGTCTAAAACCTCCTGACTCTTCAAGACCTGTCTG
ACTTCTTTCCAGGCACTTCTCCGTCTCTGCCTGAGNGGGTGGTTTTTATT
TAGTGGCCTGCAAGCCGAGATGGGCTTCTGTGCGCGAACCACCCTCAAAG
GGCTGACTTGCCCTCTGCTTGCCCTTCCCAAATAG
CCACAATCAGTGGGAGGCTGGGGGCGCCGTTTCCTACTGGGGGGACACAN
AGAATTTCAACAAAGACGAGAGGNNTNCCAGAAGGAACTGGGGAGGAGGA
AGGACACCAGAAACTGGAGAAAGGAATATTTTCGTGTTGACACATGCTAC
GTTTGTAGCTCCATGTGCTTTACAGAATCTTAAGATGGAAGTTTGGTTCA
GAACCATTGCACTTGCAGACAATCTAGGCATGTCTGTTCTACAGCTGCAT
GAGTCTGAAGGGAGGGATGAATAGTGCAAAACACGGAACATCATAAACTC
TTTTTTTTTACTACACACCACGCATACACGCACACACATGCACACTCTCA
CACTCCACTTGTACAGGTCTATGCTCATTAAGCTGATCATAGGTCTTGCC
TGTAATTTTTGTACATGCATGTAAATTCCTGCAGTTGCTATGTGGCTGTA
CACGTCCACAGATATAGTACCATCTATTTACCAATCTCTGACATTGATCA
TCTTGTGTCGCATTATGTAAACTTATGCTACTCTCCCATTTTCTTCATTC
TGTTCCTATTGAACCTGTTTTCCCCTGTGCATATTTCTTTCCTATCTCTC
TGTTTCCGCCCTCCTGCATTCGCACCCCTCTCACTCCTTTTACCCTTCTT
GTTTCTCATTTCTCAATCTCTTGTTCCCCCTTTTTTTCCCGTCTTCCCTT
GTTCTTTCATTCTCATCTCCATTAACCGTCCTTCTCATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_m09.g1 MSMg01no424_m09.g1 CHROMAT_FILE:
MSMg01no424_m09.g1 PHD_FILE: MSMg01no424_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:49 2005
         (116 letters)



>mm_chr17_70984915_70985431
          Length = 517

 Score =  219 bits (113), Expect = 6e-62
 Identities = 116/117 (99%), Gaps = 1/117 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actggagaaagga-atattttcgtgttgacacatgctacgtttgtagctccatgtgcttt 59
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 actggagaaaggatatattttcgtgttgacacatgctacgtttgtagctccatgtgcttt 258

                                                                    
Query: 60  acagaatcttaagatggaagtttggttcagaaccattgcacttgcagacaatctagg 116
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 acagaatcttaagatggaagtttggttcagaaccattgcacttgcagacaatctagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 116
Length of database: 517
Length adjustment: 8
Effective length of query: 108
Effective length of database: 509
Effective search space:    54972
Effective search space used:    54972
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)