BAC Information

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BAC

Clone NameMSMg01-426L22
Chromosome17 (Build37)
Map Location 57,880,818 - 57,881,242
singlet/doubletsinglet
Overlap genenone
Upstream geneNrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1, EG224916
Downstream geneCntnap5c, LOC674419, LOC620408, EG545216
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426L22.T7 (MSMg01no426_l22.b1)MSMg01-426L22.TJ (MSMg01no426_l22.g1)
ACCAG520111AG520112
length804806
length of high quality
(start - end)		332 (71 - 402)426 (75 - 500)
definitionCHROMAT_FILE: MSMg01no426_l22.b1 PHD_FILE: MSMg01no426_l22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:24 2005CHROMAT_FILE: MSMg01no426_l22.g1 PHD_FILE: MSMg01no426_l22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGAAATCATACTCCAGAGAATGAAATAACACTATGAAAAATGG
GGTACAGAGCTGAACAAAGAATTCTCAACTAAGGAGTACTGGATGGCTGA
GAAGTACTTAAAGAAATGTTCATTATCTTAGCCATCAGAGAAATGCAAAT
CAAAACAATCCTCATACCAGTCAAAATGGCTAAGATCAAAAACTCAGGTG
ACAGCAGATTCTGGCAAATATGTGGAGAAAGAGAAACACTCCTCCATTGC
TGGTGGGATTGCAAGCTGGTACAACCACTCTGGAAATCAGTTTGGCAGTT
CCTCAGAAAATTGGACATAGTACTACCTGAGGACCCAGCTATACCACTCC
TAGGCATATATTCAAAAGATGCACCAACATGTAATAAGGACACATGCTCC
CCTATGGTCATAGCAGCCCTATTTTATTAAAGCCGTGACTAAAAAAGGAC
CCGTTGGCCCCCCAAAAAAAAAGGGAGGCGAAAAAGGGGGTCCTTTTACC
CCTAAAAAAAAACCCCCCCTTTTAAAAAGGAGGAATCTTGGGAACTCTTC
ACCAAAGGGGAGAAACAAAAAAGGACTCTCCCCGTGGAGGGGGTCCCCCT
CTCCCAAAAACAACCCCGGGGTGGGCTTTCTCCTACCATTGTTTATTTTC
CCAACTTTTCCTCATCCTCCAAATTATTTCTTCTCCCCCTCTCTTTTTTA
TTAAAAAACAAAATAAACTTCTTGCTTCTCGTGTCTTCCTTCTTCTTTAT
AACA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTAAAGAAATAGGATGCAGGGATTGA
TGAGAGTGAAGACAGGGTCTTTGGCAATATCAACCACAGCTCATTTGCCA
TTAATAAGTCAGCCTATGTTCTGGGCTGATAATAGATGCTCTCGGGAGGC
CAGCTTTCTTCTCCTTCACAGGCAGAGTGGAGCTATGGCAAAGCAACTAT
GGGCCTAAAGGATTGTTTCTAACAGTCATAGCTCTATAGGACTTCTAATC
TCAGAAGAATCCTCTATTTAAATGGAAGAATGCCACCTTCAAGGTGCCCA
GCAAATGAGAAAATTTAGTTATCATACCTGCTATTCATCTGAACATTCTC
CTTGTTAAAAGATCAAACCATTGCTTTAATTAAAAGGTTACCAGCGAGAC
TGATGGGAGGTCCAGGTGGTGAGCAAGATGGCACAGACTCAGGGCACCAA
GAGGAAAATCTGTTACTACTACAAGGGGGACGTTTGGAACTATTATTATG
GACAAAGGCACCCAATGAAGGCTCATTGAATCCCTATGAATCCCAATTTG
CTGTTCAACTGGGGGCTCCAACCACAAAAGGGGAAACTTTTTTCTTTCCA
AAGCCCAAGCTTGAGGAAAAGGACAAGGTCCCCCCCCGCGGGAGGACCCC
TTAAATTCTTGGGGGCTTAATTGCCCCCGCAAAATCGTTTGCGAAACAGC
ATAGGGCAAGCGTTATAAATTCCCCTCTTGCTGAGTAAGTTTCGCGTTTT
CTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_l22.g1 MSMg01no426_l22.g1 CHROMAT_FILE:
MSMg01no426_l22.g1 PHD_FILE: MSMg01no426_l22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:24 2005
         (426 letters)



>mm_chr17_57880618_57881442
          Length = 825

 Score =  772 bits (399), Expect = 0.0
 Identities = 420/427 (98%), Gaps = 3/427 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaaagaaataggatgcagggattgatgagagtgaagacagggtctttggcaatatcaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaaagaaataggatgcagggattgatgagagtgaagacagggtctttggcaatatcaac 260

                                                                       
Query: 61  cacagctcatttgccattaataagtcagcctatgttctgggctgataatagatgctctcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 cacagctcatttgccattaataagtcagcctatgttctgggctgataatagatgctctct 320

                                                                       
Query: 121 ggaggccagctttcttctccttcacaggcagagtggagctatggcaaagcaactatgggc 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 ggaggccagctttcttctccttcacaggcagagcggagctatggcaaagcaactatgggc 380

                                                                       
Query: 181 ctaaaggattgtttctaacagtcatagctct-ataggacttctaatctcagaagaatcct 239
           ||||||||||||||| ||||||||||||||| | || |||||||||||||||||||||||
Sbjct: 381 ctaaaggattgtttccaacagtcatagctctga-ag-acttctaatctcagaagaatcct 438

                                                                       
Query: 240 ctatttaaatggaagaatgccaccttcaaggtgcccagcaaatgagaaaatttagttatc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctatttaaatggaagaatgccaccttcaaggtgcccagcaaatgagaaaatttagttatc 498

                                                                       
Query: 300 atacctgctattcatctgaacattctccttgttaaaagatcaaaccattgctttaattaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 atacctgctattcatctgaacattctccttgttaaaagatcaaaccattgctttaattaa 558

                                                                       
Query: 360 aaggttaccagcgagactgatgggaggtccaggtggtgagcaagatggcacagactcagg 419
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aaggttaccagcaagactgatgggaggtccaggtggtgagcaagatggcacagactcagg 618

                  
Query: 420 gcaccaa 426
           |||||||
Sbjct: 619 gcaccaa 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 825
Length adjustment: 9
Effective length of query: 417
Effective length of database: 816
Effective search space:   340272
Effective search space used:   340272
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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