Query= MSMg01no427_e18.b1 MSMg01no427_e18.b1 CHROMAT_FILE:
MSMg01no427_e18.b1 PHD_FILE: MSMg01no427_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:08 2005
(569 letters)
>mm_chr17_16825347_16826315
Length = 969
Score = 1069 bits (553), Expect = 0.0
Identities = 562/565 (99%)
Strand = Plus / Plus
Query: 5 gaattctctgtgtccaaatcatgaggcacactgaaattaattcggccctttttaacttct 64
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgtgagcaaatcatgaggcacactgaaattaattcggccctttttaacttct 264
Query: 65 ttaagccagtggctctcaacctgcgagttgcaatccctttgagaccactggaaaatacag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttaagccagtggctctcaacctgcgagttgcaatccctttgagaccactggaaaatacag 324
Query: 125 atatttacattatgattcacaacagtagcaaaaattaaagttgcgaagtagtaacataaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atatttacattatgattcacaacagtagcaaaaattaaagttgcgaagtagtaacataaa 384
Query: 185 tagttgtatcattggggccaccacaacatgatgaattttattaaagggtctcaccattag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagttgtatcattggggccaccacaacatgatgaattttattaaagggtctcaccattag 444
Query: 245 aaaggttgagaactgcttcaagtctaagtacttctgtgtattgaaaataattcccaggtg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaggttgagaactgcttcaagtctaagtacttctgtgtattgaaaataattcccaggtg 504
Query: 305 cacttctctgctacagagattctggagaaaaaaaagttaccctatcctgtctgtgctcca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cacttctctgctacagagattctggagaaaaaaaagttaccctatcctgtctgtgctcca 564
Query: 365 aaatgattgtttctcttaactctgttagagaggcaccaaactattataggaaatatcctt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaatgattgtttctcttaactctgttagagaggcaccaaactattataggaaatatcctt 624
Query: 425 ttctgtagaaaatggctactcatctttctgatttatgcctacagttaataactgattatt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttctgtagaaaatggctactcatctttctgatttatgcctacagttaataactgattatt 684
Query: 485 ttactgagataaaactcctgtaagaaccaaatagggtagagcccagattcgctatctgac 544
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 685 ttactgagataaaactcctgtaagaaccaaataggatagagcccagattcgctatctgac 744
Query: 545 cactgggataaaaaaggaagacaaa 569
|||||||||||||||||||||||||
Sbjct: 745 cactgggataaaaaaggaagacaaa 769
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no427_e18.g1 MSMg01no427_e18.g1 CHROMAT_FILE:
MSMg01no427_e18.g1 PHD_FILE: MSMg01no427_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:08 2005
(486 letters)
>mm_chr17_17003454_17004340
Length = 887
Score = 890 bits (460), Expect = 0.0
Identities = 480/487 (98%), Gaps = 1/487 (0%)
Strand = Plus / Minus
Query: 1 attggctagttcactacaataaaattggactaccataggaacatatctcaaattgcactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 attggctagttcactacaataaaattggactaccataggaacatatctcaaattgcactg 628
Query: 61 ccttcactggcagggtggttctgatagtagattctgaacatagccagttcaaacctaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ccttcactggcagggtggttctgatagtagattctgaacatagccagttcaaacctaagc 568
Query: 121 tgtaaagttctaagcaatttctaaccatgaatcaaaaataagtttaacaaaatactctaa 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tgaaaagttctaagcaatttctaaccatgaatcaaaaataagtttaacaaaatactctaa 508
Query: 181 gtaactaaggtaacatcatcgaaatttcttatctctttgtatgtcattgtttcataaaat 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gtaactaaggtaacatcatcaaaatttcttatctctttgtatgtcattgtttcataaaat 448
Query: 241 ttagtattacacat-aaaaattgccatatatttaattttacttttttataaggtgaaata 299
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 447 ttagtattacacataaaaaattgccatatatttaaatttacttttttataaggtgaaata 388
Query: 300 cgtaatgggaaagtttcatttgctgaaattcatataggaatatttcactctcttcattga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cgtaatgggaaagtttcatttgctgaaattcatataggaatatttcactctcttcattga 328
Query: 360 ttataaaggtgtgtgcaaatgaaagaaacagcaattccaatacaatccttatacagtccc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 327 ttataaaggtgtgtgcaaatgaaagaaacagcaattccaatacaatccttatacagttcc 268
Query: 420 taatattcagctatattcaggagcctattactattgcatatgtaattattttgttaanat 479
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 267 taatattcagctatactcaggagcctattactattgcatatgtaattattttgttaaaat 208
Query: 480 aatataa 486
|||||||
Sbjct: 207 aatataa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 887
Length adjustment: 10
Effective length of query: 476
Effective length of database: 877
Effective search space: 417452
Effective search space used: 417452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
