BAC Information

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BAC

Clone NameMSMg01-429O24
Chromosome17 (Build37)
Map Location 79,796,349 - 79,796,688
singlet/doubletsinglet
Overlap geneLOC639964
Upstream geneFez2, LOC100043888, Hdac1-ps, Vit, Strn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3
Downstream geneAW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074, Hnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57, Morn2, Sos1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429O24.T7 (MSMg01no429_o24.b1)MSMg01-429O24.TJ (MSMg01no429_o24.g1)
ACCAG522549AG522550
length765733
length of high quality
(start - end)
426 (34 - 459)340 (77 - 416)
definitionCHROMAT_FILE: MSMg01no429_o24.b1 PHD_FILE: MSMg01no429_o24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:34 2005CHROMAT_FILE: MSMg01no429_o24.g1 PHD_FILE: MSMg01no429_o24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGCGCTATACGACTCCTATATTCAGAGGATCCGCGGAATTCTTTGTTC
TTCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGTCCAC
CTTCTTGAGTTCTTTATATATATTAGATATTAGTCCCCTATCCGATTTGG
GATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCTTTTTGTCTTATTGA
CGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATTTA
TCGATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTT
TTCCCCTGTACCCATATCTTCGAGGCTTTTCCCTACTTTCTCCTCTATAA
GTTTCAGTGTCTCTAATTTTATGTGGAGTTCCTTAATCCACTTAGATTTG
ACCTTAGTACAAGGAGATAGAAATGGATCAATTCGCATTCTTCTACATGA
TAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTCC
ACTGGATGGTTTTAGCTCCCTTGTCTAAGATCAAGTGACCATAGGCGGGC
GGGGTCATCTCTGGGCCCTCATTTTATTCCCTTGGGCTCACTTGTCTGCC
CCTATTCCGTACCCTGGCGTTTTTTATTCCCATTGCTCTGGTCTACCGGT
TTATCTCCCGGCTTGGTGTTTTCCTCCCCGAAGTTCTTCTTTTTCTTTGG
GAAAAATATTTTGCTGTTCCCCGGTCTTTTTTGGTATTCCCATTATTTTC
TGTCCCTTTGTCTCT
NNCCGATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTACTGGCATTAATGGCACCCG
TTACAGTGTGTGGTGATGTGTGCCTAAATTCTCCTGCTACAATGTTTCCT
TGTTTTAATTTTTATTTTCAACTGATTCTCAACTATCACTTTCTTACACA
TAGGGGTTATATCTGTATTGTCTTTTAAACCTGGTATGTGTAGAGTGCAC
TTGAAAACATTTAAATTGATGAGTAAATGACTCATTTAAAGAATTGGAGA
CAGACAGTACTATATGATGCACTATCTCCAGCCCTTTATAATGTGTCTCT
TATGCATGTTATGTTACTGAATGTTCTTACTACTTTTCATATCAATATAA
CATGTCAAGACCAGTAXXXXXXXXXXXXXXXXXXXXXTGGGCAGAGAGTA
AGAGAGGACATGAATTTCAAGTCACTGACCTACTTTAGTCAATGTCCCGA
TTGTCAGTGGCAGCCTCCTTTATAAAAGCAATGTCTAAACCAGTTGGGAC
ATGAGACCCCCCCATACCCTCGGAGAAAAGTTTGGTACTCCCCACACCAT
TTTTTTGAAAAAAAATTCCAAACCTACTCTTTTGTTTTCTAAATTCACTT
TACGGCAAACCGGAAAGTGTAACCCTTTTTTAACAAAACCCTCTCTTTAT
ATTTTTAACACGCGCATTTTTGGCCCCCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_o24.g1 MSMg01no429_o24.g1 CHROMAT_FILE:
MSMg01no429_o24.g1 PHD_FILE: MSMg01no429_o24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:34 2005
         (340 letters)



>mm_chr17_79796149_79796888
          Length = 740

 Score =  658 bits (340), Expect = 0.0
 Identities = 340/340 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttactggcattaatggcacccgttacagtgtgtggtgatgtgtgcctaaattctcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 acttactggcattaatggcacccgttacagtgtgtggtgatgtgtgcctaaattctcctg 481

                                                                       
Query: 61  ctacaatgtttccttgttttaatttttattttcaactgattctcaactatcactttctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ctacaatgtttccttgttttaatttttattttcaactgattctcaactatcactttctta 421

                                                                       
Query: 121 cacataggggttatatctgtattgtcttttaaacctggtatgtgtagagtgcacttgaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cacataggggttatatctgtattgtcttttaaacctggtatgtgtagagtgcacttgaaa 361

                                                                       
Query: 181 acatttaaattgatgagtaaatgactcatttaaagaattggagacagacagtactatatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 acatttaaattgatgagtaaatgactcatttaaagaattggagacagacagtactatatg 301

                                                                       
Query: 241 atgcactatctccagccctttataatgtgtctcttatgcatgttatgttactgaatgttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 atgcactatctccagccctttataatgtgtctcttatgcatgttatgttactgaatgttc 241

                                                   
Query: 301 ttactacttttcatatcaatataacatgtcaagaccagta 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ttactacttttcatatcaatataacatgtcaagaccagta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)