XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGA
CTATACCAGTGTGGTTTGCACATTCACTGCCAGTTTGACCGCTCCCTTGT
TCATGCAGTCTGCTTCTAGAACATACTGAAAGCCTACCAACTGCTGAGAC
TCCTGGGATAAAGAAGTTGACTCTAAAGAGGAAGACAAATCCAGCCCTAT
TGAAGTAACTTGAAATCTTGTCAGCAGTAGGCAACAAGAGCAACAAAACT
AACAAGATTTTTATTAGACTAGGGAAAAAGATAAAGTACTAAAATGAATG
AAAGAAGAAGGGATTGTCAGAATCAGTCTTACAAAATGAAAAGAATTATA
TAGGATTTTTATTAAGATCCGCATGCCAAAGTTTGACTAACTTAAATGAA
TTGTACATTAACTAAATATCTACCTATATATTCATATATTATAAAAATTT
ATATATAATACAATTTATATACATTATAACTATGTAACTATATTTAATAT
ATAATATAAATAAATAAACTAGGCAGGGGCTGCAGAGGACCTGGACTTGA
TTCCAAGCATCCACATAGTGGTTCACAACTTCCTACAGCTCCAGTGTTAG
GGGATCTGATGCCCTCTTCTGGCCTCTGAGAGTTCTGCTTGCCTGTGATT
CATAGAAACTCCCTTAGTAAAACACCCTACCAATAAAGACATCCTTTTAA
GAAAGACCTAAACTACGAAAAATGGCCCCGGGAACCAAAAGGAACCTAG

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTACAGCTGATAAACAACTTCAGCAAA
GTGGCTGGATATAAAATTAACTCAAACAAATCAGTAGCCTTCCTGTATTC
AATGAATAAATTGGCTGATAAAGAAATCCAGGAAATCACACCCTTCACAA
TAGTCACAAACAATATAAAATACTTTAGTGTGACTCTAACCAAACAAGTG
AAAGATCTGTATGACAAGAATTTCAAGTCTCTGAAGCAAAAAATTGAAGA
AGACTTCAGAAGATGGAAAGATCTCCCATGCTCATGGGTTGGCAGGATTA
ATATAGTTAAAATATGCATCTTGCTGAAAGCAATCTACAGATTCATTGCA
ATCCCCATCAAAATTCCAACTCAATTCTTCATAGAGTTAGAAAGAGCAAT
TCTCAAATTCATTTGGAATAACAAAAAACCTAGGATAGTGGAAACTATTC
TCAACAATAAAAGAACATCTAGGGGAATCACCATCCCTGATATCAAGCTG
TACTACAGAGCAATAGTGATAAAAACTGCATAGTATTGTTACAGTGACAG
GTAGGTATATCAATGGAATACAATTGAAGACCCCGAAATGAACCCCCCCC
CCTATGGCCATTTGAACCTTGATAAACAAACCACACCACTCCGCGAAAAA
AGGGACCCCTTCCCATCAATGGTGCG

Query= MSMg01no429_p11.b1 MSMg01no429_p11.b1 CHROMAT_FILE:
MSMg01no429_p11.b1 PHD_FILE: MSMg01no429_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:36 2005
         (529 letters)



>mm_chr17_50111710_50112639
          Length = 930

 Score =  917 bits (474), Expect = 0.0
 Identities = 515/532 (96%), Gaps = 10/532 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgtggtttgcacattcactgccagtttgaccgctcccttgttcatgcagtctgcttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 agtgtggtttgcacattcactgccagtttgaccgctcccttgttcatgcagtctgcttct 497

                                                                       
Query: 61  agaacatactgaaagcctaccaactgctgagactcctgggataaagaagttgactctaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 agaacatactgaaagcctaccaactgctgagactcctgggataaagaagttgactctaaa 437

                                                                       
Query: 121 gaggaagacaaatccagccctattgaagtaacttgaaatcttgtcagcagtaggcaacaa 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 436 gaggaagacaaatccagccctattgaagtaacttgaaaacttgtcagcagtaggcaacaa 377

                                                                       
Query: 181 gagcaacaaaactaacaaga-tttttattagactagggaaaaagataaagtactaaaatg 239
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gagcaacaaaactaacaagattttttattagactagggaaaaagataaagtactaaaatg 317

                                                                       
Query: 240 aatgaaagaagaagggattgtcagaatcagtcttacaaaatgaaaagaattatataggat 299
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aatgaaagaagaatggactgtcagaatcagtcttacaaaatgaaaagaattatataggat 257

                                                                       
Query: 300 ttttattaagatccgcatgccaaagtttgactaacttaaatgaattgtacattaactaaa 359
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ttttattaagaaccgcatgccaaagtttgactaacttaaatgaattgtacattaactaaa 197

                                                                       
Query: 360 tatctacctatatattcatatattataaaaatttatatataatacaatttatatacatta 419
           |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||  
Sbjct: 196 tatctacctatatattcatatattataaaaatttatatataatataatttatgtacat-- 139

                                                                       
Query: 420 taactatgtaactatatttaatatataatataaata-a-ataaactaggcaggggctgca 477
               |||||||||||||||||||||||||||||| | | |||||||| ||||||||||||
Sbjct: 138 ----tatgtaactatatttaatatataatataaa-acatataaactaagcaggggctgca 84

                                                               
Query: 478 gaggacctggacttgattccaagcatccacatagtggttcacaacttcctac 529
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  gaggacctggacttgattccaagcatccacatagtggttcacaacttcctac 32


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 930
Length adjustment: 10
Effective length of query: 519
Effective length of database: 920
Effective search space:   477480
Effective search space used:   477480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)