BAC Information

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BAC

Clone NameMSMg01-430I03
Chromosome17 (Build37)
Map Location 63,795,838 - 63,796,289
singlet/doubletsinglet
Overlap geneFbxl17
Upstream geneEfna5
Downstream genePpia-ps17_1026.1, LOC638867, LOC668677, A930002H24Rik, Fert2, LOC669778, Pja2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430I03.T7 (MSMg01no430_i03.b1)MSMg01-430I03.TJ (MSMg01no430_i03.g1)
ACCAG522986AG522987
length1,061786
length of high quality
(start - end)
---452 (79 - 530)
definitionCHROMAT_FILE: MSMg01no430_i03.b1 PHD_FILE: MSMg01no430_i03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:23 2005CHROMAT_FILE: MSMg01no430_i03.g1 PHD_FILE: MSMg01no430_i03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATAAAAATAAACAAGGANTGCGCAAAAGAACAGGACCGCAGCTCTGCC
GTTTTTTTGAGTNNNAAACCTCTGCGCCCCGCCGCCCAGTCCGAGTGTAT
CTAAACTATAAGATGGCAAAAATATGATCATAATTGGATTGTAAAGTAGC
ACTCCCCCTTACCTGTTTAAGACCACTGTCACGGCGCTGCTCCCCATACT
CCCAACCACTATTCACACCCACAACACAGTAATATTTAGTAACTTCCCAA
CGCAAGCGAGCGACCGCGGCAGCGTCACAGGTCGACAGAGAAGACGGAAC
AGTTCCCTACACTTCAACACCCCCCACGTCGGACGCTAGGAGACACGAAC
CAGGGGCCCCGCCGCCTGGTTGCGAGCCACAGGGTCCGTCACTACGGGCA
CTAGAACCTCCTACCTTCCCAAATCCATCATCTCCCNNCCCCNCCNNNCG
TTCCACTCATACCACACACTCTCCCAACAAGCTACGGCCCCGAAAAGCCA
CTCTATTATCCCTATCCACACACTATAACCAGACCGCCCCTTTCCCTTTT
CCTNTAACCTCCCCCCCTCTTCCCCCACCCTNCCNNNCCCCCNNNNNNNC
CCCCCNNNNNCNNNNNNTTAGTAACGGNTAGAAGNNNCAGAGGGAGGGGG
CCCCCAAAGGGAGAAGGAGGCCAGCAGCCNNCNNNNTCCCACCCCCTCTT
AGCGACCTAGAAGAGAAGAGCGAAGAGCNNNNTTGTAAAGGCAGAGGTTA
GTCGAGAGTATAGGCCNCNCCCCCCCCNNTTTNTGCACNNNNCCTACAAA
AAAGAAAAAGCCGCNAGNCCAAGTAAGAGAAGCAGGCNACCCCGCGAAGC
CCGCAGGGCAGGGNAGGCTCGCCCTAAGAGAAAGAAAAAAAAATATTTTT
GGGCAGGCCGCGGTGAGTAGGCGGGCNCCACATATAAGAAAAAATACATA
AAAAGCGCGGTTAAAAACAGATTGAACTACACCACGGCTGTAAAAGGAAT
GTAGGAGGTGTTGTGTGGGGGTTTTNNNNTCGAGGNNAAAAAAAGAAGGA
GAAAAAAAAAN
NNCCCATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTATATTACAAAAATCCTTAA
GACCTTCTCATGAGCAAGTTTATAAGCAAGCATCCTGCACACAGTACCTA
CTAGTAAGCCAATAAGAAGAATAATCAACAAAAAGGAGCAAAGTGCAAAT
TAATATTTATAAAAGTGGTGCACTTTATTTCATCATTATCATTACATTCC
TGCAATTCTAAAATTCATTTTTATATATTTTCAAGCTTTACAAAGTGCTT
TAAAATCTGCCATCTTATTCTAGTCTCCCCAAATACTTAGACGAGGTGAA
CGGTATAACATCAATTGTGCAATAAATTTTATATCGATGATATCAAAACA
TTCTGGGGAGTTATGCAGGTGGAAGAGGGAACAAAGCGTGGAAGGTATGA
TAATCAGAATCACTTTTAAACATGAATAAATAACATTGTCAAAGAAGGAA
TTCAAAAGAAAATGATGCTTTCCCATTTTTAACAGGTTTTGAACAACCAA
TGCCGAGCAATTCGTCATTATGTTCACTGAGAAACATGTCCCTAAAATCT
ATTAAAAGTAACAGGTCAGTCTATTTAACGTGGATCCATTCTACAGGCTC
GAAAAAAACTCTGTCTGTTTACAGGGGAAATAACTCAAAGAAATGCTATT
GCTTGCTGTGCCTCCTGGCGCCCTATGTCCCCCTCTAATCTGAGAGCAAT
AAATACCTATCCTTCCCAACTCTCCTTCTTATCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_i03.g1 MSMg01no430_i03.g1 CHROMAT_FILE:
MSMg01no430_i03.g1 PHD_FILE: MSMg01no430_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:23 2005
         (452 letters)



>mm_chr17_63795638_63796489
          Length = 852

 Score =  851 bits (440), Expect = 0.0
 Identities = 449/452 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctatattacaaaaatccttaagaccttctcatgagcaagtttataagcaagcatcctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctatattacaaaaatccttaagaccttctcatgagcaagtttataagcaagcatcctgc 260

                                                                       
Query: 61  acacagtacctactagtaagccaataagaagaataatcaacaaaaaggagcaaagtgcaa 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacagtacctgctagtaagccaataagaagaataatcaacaaaaaggagcaaagtgcaa 320

                                                                       
Query: 121 attaatatttataaaagtggtgcactttatttcatcattatcattacattcctgcaattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 attaatatttataaaagtggtgcactttatttcatcattatcattacattcctgccattc 380

                                                                       
Query: 181 taaaattcatttttatatattttcaagctttacaaagtgctttaaaatctgccatcttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaaattcatttttatatattttcaagctttacaaagtgctttaaaatctgccatcttat 440

                                                                       
Query: 241 tctagtctccccaaatacttagacgaggtgaacggtataacatcaattgtgcaataaatt 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctagtctccccaaatacttatacgaggtgaacggtataacatcaattgtgcaataaatt 500

                                                                       
Query: 301 ttatatcgatgatatcaaaacattctggggagttatgcaggtggaagagggaacaaagcg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttatatcgatgatatcaaaacattctggggagttatgcaggtggaagagggaacaaagcg 560

                                                                       
Query: 361 tggaaggtatgataatcagaatcacttttaaacatgaataaataacattgtcaaagaagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggaaggtatgataatcagaatcacttttaaacatgaataaataacattgtcaaagaagg 620

                                           
Query: 421 aattcaaaagaaaatgatgctttcccattttt 452
           ||||||||||||||||||||||||||||||||
Sbjct: 621 aattcaaaagaaaatgatgctttcccattttt 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)