BAC Information

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BAC

Clone NameMSMg01-431N17
Chromosome17 (Build37)
Map Location 75,902,377 - 75,902,842
singlet/doubletsinglet
Overlap geneRasgrp3
Upstream geneBirc6, Ttc27, LOC100043672, Ltbp1, EG621988
Downstream gene2810405J04Rik, LOC668787, LOC100043885, LOC100043886
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431N17.T7 (MSMg01no431_n17.b1)MSMg01-431N17.TJ (MSMg01no431_n17.g1)
ACCAG524018AG524019
length767778
length of high quality
(start - end)
314 (59 - 372)466 (66 - 531)
definitionCHROMAT_FILE: MSMg01no431_n17.b1 PHD_FILE: MSMg01no431_n17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:21 2005CHROMAT_FILE: MSMg01no431_n17.g1 PHD_FILE: MSMg01no431_n17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCGCTAAACGACTCCTATATTCAGAAATCCGCGGAATTCTCTTTGGTTG
CCGGAATAATCCCTAGGGGTTCTGAAGGGTCAAAGGGTGATCCCCTTTAG
CTCCTTCAGTCCTTCCCCTAACTCTTCCATTGGGGACCCTGGGCTCAGTC
CAATGATTGGTCTGCCTTAGGTGCTGGCAGAGTCTCTCAAGGGAAAGACC
AGGCTCCTGTCTGCAAACACTTCTCGGCATCAGAAATAGTGTCTTTGTGT
CTGCAGATGAGAAGGATCCCAAGGTGGGGCAGTCTCTGGATGGCCTTTCC
TTCAGTCCCTGCTCTGTTTTTTTTTTTGTTTGTTTGTTTGTTTGTTTCTT
TGTTTGTTTGGTTGGTTGGTTGNNNNNNNNTTTNNNNNNNNNNNNNNNNN
CCCCCCCNTTTTTTTTTTTTCTTTTTCCCTTTCTCTCTTTTTTCTTCTCC
TTTTTTTTCTTTCCTCTCTTTCCTCCCCTCTCCTTCTTTTCCCTCTCTCT
TTCTTTCTCTCTCTTCCCCCCTTTCTTTTTTTTTCTCCTCCTTCCCTCCT
TTTCCTTTCCTCTTCCCTCCTTTTTCCTTCTTCCTTTCCTCTCCTTCCTT
CTTTTTTTCTCTCCCCTCTCCCCCCTTTTTTTTCTTTTTTTTTTTTCTCC
NTCCTCCCTTCCCTCCTCCCCCTTCCTTTTTCTCTCCTTTTTCCCCTCTT
TTCTTCTCTCCCCTTTCTCTTTCTTCTTCTCCCCTCCTTTCTTTTTCTTC
TCTTTTCNTCTTCCCCN
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCAAACCACATATTCCAGAATCTGGGAGTGGACAGGGGAG
AAAGTTGCTGCTTGAAAATTCTACTTTTCCATCTCTTCCCAGAACTGGAA
CGAAATGACAGAGTTGGTCTCCTCCAATGGCAATTACTGCAATTACCGCA
AAGCCTTTGCTGACTGTGATGGCTTCAAAATCCCCATCCTTGGCGTGCAC
TTGAAAGACTTGATAGCAGTCCATGTCATTTTCCCAGACTGGATGGAGGA
GAACAAAGTGAACGTTGTGAAAATGCACCAGCTTTCTGTTACCCTGAGTG
AACTGGTCTCCCTGCAGAATGCCTCTCACCACTTAGAACCTAACATGGAT
TTGATCAACCTACTCACTGTGAGTCCCAGGGGTCAATAGTATGCTATTTG
TACTTTGTATCTTAATTTCCAGTGTCATCGAAAGATATGTTGTAACAATT
CACTTTAGAGGGAGAATAATTTGAGGTCAGTCCATGGAGCCTAGGCCTAA
GGAGCCTAGGACTAGGATGAGGCTCTCAAAGGATGAGGCTCTCCAAGGAT
GAGGGAAACTAGAACCTTACACCCCCCAGGAGCATGATTTGAGACTGGAG
TCCTCTTGTGAAATAATTTTTCCTTTTTTGGGAAAACCCAATTCCCGCGC
CAATTAAACCCTTTCCTCAAAAACCATTTTAACCCATTATTTCCTTTTCC
AAATCTGTGGCAAAATAAAACCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_n17.g1 MSMg01no431_n17.g1 CHROMAT_FILE:
MSMg01no431_n17.g1 PHD_FILE: MSMg01no431_n17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:21 2005
         (466 letters)



>mm_chr17_75902177_75903042
          Length = 866

 Score =  878 bits (454), Expect = 0.0
 Identities = 463/466 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccacatattccagaatctgggagtggacaggggagaaagttgctgcttgaaaattctact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccacatattccagaatctgggagtggacaggggagaaagttgctgcttgaaaattctact 260

                                                                       
Query: 61  tttccatctcttcccagaactggaacgaaatgacagagttggtctcctccaatggcaatt 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 tttccatctcttcccagaactggaatgaaatgacagagttggtctcctccaatggcaatt 320

                                                                       
Query: 121 actgcaattaccgcaaagcctttgctgactgtgatggcttcaaaatccccatccttggcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgcaattaccgcaaagcctttgctgactgtgatggcttcaaaatccccatccttggcg 380

                                                                       
Query: 181 tgcacttgaaagacttgatagcagtccatgtcattttcccagactggatggaggagaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcacttgaaagacttgatagcagtccatgtcattttcccagactggatggaggagaaca 440

                                                                       
Query: 241 aagtgaacgttgtgaaaatgcaccagctttctgttaccctgagtgaactggtctccctgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtgaacgttgtgaaaatgcaccagctttctgttaccctgagtgaactggtctccctgc 500

                                                                       
Query: 301 agaatgcctctcaccacttagaacctaacatggatttgatcaacctactcactgtgagtc 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaatgcctctcaccacttggaacctaacatggatttgatcaacctactcactgtgagtc 560

                                                                       
Query: 361 ccaggggtcaatagtatgctatttgtactttgtatcttaatttccagtgtcatcgaaaga 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaggggtcaatagtatgctatttgcactttgtatcttaatttccagtgtcatcgaaaga 620

                                                         
Query: 421 tatgttgtaacaattcactttagagggagaataatttgaggtcagt 466
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatgttgtaacaattcactttagagggagaataatttgaggtcagt 666


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)