BAC Information

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BAC

Clone NameMSMg01-432D01
Chromosome17 (Build37)
Map Location 65,529,746 - 65,530,221
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC669778, Pja2, LOC100043582, Man2a1, 4930583I09Rik, LOC100043871
Downstream geneE130009J12Rik, LOC668655, LOC674701, Vapa, Txndc2, Rab31, Ppp4r1, Ralbp1, LOC100043873, LOC100043592, Twsg1, Ankrd12, 5430411C19Rik, Ndufv2, ORF19, Ddx11, LOC100043599
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432D01.T7 (MSMg01no432_d01.b1)MSMg01-432D01.TJ (MSMg01no432_d01.g1)
ACCAG524270AG524271
length781803
length of high quality
(start - end)
479 (37 - 515)415 (72 - 486)
definitionCHROMAT_FILE: MSMg01no432_d01.b1 PHD_FILE: MSMg01no432_d01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:49 2005CHROMAT_FILE: MSMg01no432_d01.g1 PHD_FILE: MSMg01no432_d01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTATAAA
ATATTTACTATGGATTATTTACCCCAGGACGGACAGGTTTATAGACACTG
GAGATGTACTAGTTACTATAATAGATAAGAATTTCATCTTCAAATAGTTT
AATTCCAGGGGGAACTATAGACAATCACCAGGAGAACACATAAAAAGCAA
GTGGCAGATGATACATGGCACAGTGACAATAAGCAGTCACATGATGATGG
CATATCACCCTGGGTGGTCAGGAACCCTTCAGCGAAAACTAATATCTAAA
CTAAATCCTGACTCAAAGTAGGAGTCAGCTTACTTACAGTTGCCATGAAG
ATGATTACAGTCCGAAGCAAATACACAAGCAAACCTAATACTATGAGAGA
ACAGAGCTACTCACTGTAGTGTGCTGAGCTGGGGCTCGAACAGCGGAGTC
AGCAGAGATGGGGACACAGACAATTTTGAAACCACAGGCTTAGAGTGTGA
CTTTATTCCGAGTGTATTATGAAAATATTTGCATGTTATAAGTGAGAAAG
CAGTGCAGTATCTTTTTACGAGTCTACCCGTTCCGCCTTTTTTTCTGTTT
ATTGTTGTCGATCCCTAGTTTCTGCCGAGGGCGCCTTTTCGTCTTTTTTT
TCACCCTTGTTATTTTTTCCCTACTTTCCCCCCATCTTATCCTCGTCTTT
CCTAAACGTATTATTTCTCCCTATTATTTTTTGTCCTCCTTCCTCTAACT
TTCTTCCACTTGCCCATGTATCGTCTTGCTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTAAAATTATATCAATGATTATTAAGCTC
TTTTATAGTGGGACTGCTATTAGGTTCTCTTCTGATAGTCAAAACTGCAA
TGAGAACTCTGCCAGTCTCCCAAGAATTGCTCTTAGTAACCAGACTTTCT
CATACTCAGAGCACATTCCAATTAATCAAAGGTAATAAAAAGGGAACTAA
CAATTTATTATAGGTGGTAGGACTGAGGATAAAATATCGACCGAGTTTAT
CTATACAAAACATCACTAATAACTTAATTATAGTTTTAAACCTTCAGCGA
ACCTGTGGAGCTGTGACAGGTGATGGATGTTTAGCCAGATAATTATTCCT
AATGGATATGCATGAAAATATTCTCTGGTGTAAACTTCTACTTCAATCTA
TGATTTGATTTTATGTGTGAACTTGCGATGAATATGTGATCATGTATTTC
TGATAGATGTTCATATGCTGATGATACTGAGAAGTGCTTGAATTGACCTG
ATCTTATTGTCTTCTACACTGGATTTCCCCTTCTCTGATATTTTTTTCCT
TGCATATCTTTTCTCCCTCCGTGCCGTCCATTGGTTATTAATATTGTCCT
TGCTAGTTGCTCTCTTTTTTTTTCTATTTTTTTATTGCGACACTGATATC
ACTCTTCTTTTTCCTCTATACTCCCCTTATTGATTACACTCCCCCTCCAT
CTGTCATAACTTTCTAACACGTATCCCATATATTGTCCTTCTATCTTACA
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_d01.b1 MSMg01no432_d01.b1 CHROMAT_FILE:
MSMg01no432_d01.b1 PHD_FILE: MSMg01no432_d01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:49 2005
         (479 letters)



>mm_chr17_65529544_65530421
          Length = 878

 Score =  799 bits (413), Expect = 0.0
 Identities = 461/479 (96%), Gaps = 7/479 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaatt-ataaaatatttac---tatggattatttaccccaggacggacaggtttatagac 60
           ||||| |||||||||  ||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcataaaatat--acaattatggattatttaccccaggacggacaggtttatagac 260

                                                                       
Query: 61  actggagatgtactagttactataatagataagaatttcatcttcaaatagtttaattcc 120
           |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 261 actggagatgtactagttactataatagataacaatttcatcttcaaatattttaattcc 320

                                                                       
Query: 121 agggggaactatagacaatcaccaggagaacacataaaaagcaagtggcagatgatacat 180
           |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 agggggaactataggcaataaccaggagaacacataaaaagcaagtggcagatgatacac 380

                                                                       
Query: 181 ggcacagtgacaataagcagtcacatgatgatggcatatcaccctgggtggtcaggaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcacagtgacaataagcagtcacatgatgatggcatatcaccctgggtggtcaggaacc 440

                                                                       
Query: 241 cttcagcgaaaactaatatctaaactaaatcctgactcaaagtaggagtcagcttactta 300
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttcagggaaaactaatatctaaactaaatcctgactcaaagtaggagtcagcttactta 500

                                                                       
Query: 301 cagttgccatgaagatgattacagtccgaagcaaatacacaagcaaacctaatactatga 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 cggttgccatgaagatgattacagtccgaagcaaatacacaagcaaacctaataccatga 560

                                                                       
Query: 361 gagaacagagctactcactgtagtgtgctgagctggggctcgaacagcggagtcagcaga 420
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 gagaacagagctactcactgtagtgtgctgagctggggctcgcacagcggagtcagcaga 620

                                                                      
Query: 421 gatggggacacagacaattttgaaaccacaggcttagagtgtgactttattccgagtgt 479
           |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 gatggggacacagaca-ttttgaaaccacaggcttagagtgtgactttattccaagtgt 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 878
Length adjustment: 10
Effective length of query: 469
Effective length of database: 868
Effective search space:   407092
Effective search space used:   407092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)