BAC Information

Click to search

BAC

Clone NameMSMg01-435P04
Chromosome17 (Build37)
Map Location 73,975,698 - 73,976,037
singlet/doubletsinglet
Overlap geneGalnt14
Upstream geneYpel5, Lbh, Lycat, LOC668709, Capn13, LOC100043666
Downstream geneEhd3, LOC240160, Xdh, Srd5a2, Memo1, EG668716, 2810410M20Rik, LOC668773, LOC668775, Spast, Slc30a6, Nlrc4, LOC100043883, LOC624159, Yipf4, Birc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435P04.T7 (MSMg01no435_p04.b1)MSMg01-435P04.TJ (MSMg01no435_p04.g1)
ACCAG527132AG527133
length853769
length of high quality
(start - end)
246 (47 - 292)371 (78 - 448)
definitionCHROMAT_FILE: MSMg01no435_p04.b1 PHD_FILE: MSMg01no435_p04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:53 2005CHROMAT_FILE: MSMg01no435_p04.g1 PHD_FILE: MSMg01no435_p04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAGAGGATCCGCG
GAATTCTTTGTTTTTCTCTGTTCCTCATTTTTTAATAGGATTATTTGATT
TTCTGGAGTCCAGCTTCTTGAGTTCTTTGTATTAAGGGAAAGTAATTGTT
GCTTCATGTTATTTTTGTTGTTAGAGTTGGGACTCTGTTCTTGAGGCTGT
CTTCTTTTAGATTTGTTGAATGATACTTTCTTGCTTTTTCAAGGGTGTAA
TTTCCCTCCTTGTATTGGAGTTTTCCCTTTAATATCCTTTGAAGGCCTGT
ATTCCTGGAACGACATGGTGTGATTTTGTGTTTGTCCTGGGTTACTTTGT
CCTCTTTTTCCTTCGCTACTCGATAGCGCTGCGCCCTTTTACTCATCCTG
CCCTTTGTACCTGCTTTTCCCCCTTGCTTCCGTATACCCTCCTTCCTGAG
CTCCTCGCTCGATTTCCCTTGTTTTCCGTGTCCCTTTCGCCTTTTTCCCT
TCTCCCTGTTTCTTTATTTTCTTTTTCTGTGTGCTCCCCTCCCTCCTGTA
CTTTCTATCTCGACCTCGCCTCTATATTTTTACCATGTCCTTCTATTATC
CCCCCCCTTGTTCCCTCTTCTTCCCCCCCCCCGCCTCTATTCCTCTCTTC
TTTATCTTTTTCGCCCTCTTCCGACCCCCTTTTTTTCCCTTTTTTTTTTC
TCTCCTCCCCTCTCCTCCACCCTGTTTTTTTTTCCTCTCCCCTTTCTTGT
TTCCCCCCCTTTTTTCTCCTTTTTTCTACTTCCTCTTCCTCACCCCTTTT
TTTTTTCTTTTATCCCCCTTTTTTCTTTTTCTTCTTTTACCCCCCCTTCG
CCG
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACTTTAGCACCTAATAATCT
TCACATTTATTCAGCATCTGAAGAGTGGTTTTCCGAACCTTTGCTTCCAG
GCTAGCTGGTACATGTATGTTGGTTCATGTGGAAGCTCAGGGTTGGTTTC
ATGTTTAACTTTTCACTGAGACAGGGTCTCTCAAAGCAAGAGCTTGCCAA
TATGGGTAGTCTTGCTCGCCAGCTGGTCTGGGGATATCCTGTCTTTGCTT
TCTGCGGCTGGAATTACAGGTGCCCACCTGCCATTTGCATGAGGTCAGGA
TATTCTGACTCTAGTCGCCATGCATGCACAGAAAACACGTTAATCACAGA
GTATCTCCCCGCTCCAATCTAAGTCTCAAATCCAACTACTGAAAGTGCTG
TCAAATAACAAAGAAGAATCCCATTTTCTTTTTTTCATCTTTCTTATCAG
GGCCTTACGATGAAGAAATATTTATCTGCAATTTCTCAGGGTCTCCAAAT
ATAAACCCTAGAGCCATTAGATATCCCCCCCCATGGGTCTACCCCAATAT
ATGTATATATATGCGGGGGCCGCGGGTACCTCTTTTATTATTGTGCTTAT
GCTCCTCCTTTTTGTTCGCCTCTTTTTCTCCCGCCCTTTTTTTTTTCTTC
CCTCCACCCCTCTTCTCTTTCGTTTTTATCTCGTCTGTCCCCCCCCCTCT
TCTTTTCCTCTTCCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_p04.g1 MSMg01no435_p04.g1 CHROMAT_FILE:
MSMg01no435_p04.g1 PHD_FILE: MSMg01no435_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:53 2005
         (371 letters)



>mm_chr17_73975698_73976469
          Length = 772

 Score =  569 bits (294), Expect = e-166
 Identities = 327/340 (96%), Gaps = 5/340 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcactttagcacctaataatcttcacatttattcagcatctgaagagtgg-ttttccga 59
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 340 ttcactttagcacctaataatcttcacatttattcagcatctgaagagtggtttttccga 281

                                                                       
Query: 60  acctttgcttccaggctagctggtacatgtatgttggttcatgtggaagctcagggttgg 119
           ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 280 acctttgcttccaggctagctggtacacgtatgttggttcatgtggaagcccagggttgg 221

                                                                       
Query: 120 tttcatgtttaacttttcactgagacagggtctc----tcaaagcaagagcttgccaata 175
           ||||||| ||||||||||||||| ||||||||||    ||||||||||||||||||||||
Sbjct: 220 tttcatgcttaacttttcactgaaacagggtctctcaatcaaagcaagagcttgccaata 161

                                                                       
Query: 176 tgggtagtcttgctcgccagctggtctggggatatcctgtctttgctttctgcggctgga 235
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 160 tgggtagtcttgctcgccagcttgtctggggatatcctgtctttgctttctgcggctgga 101

                                                                       
Query: 236 attacaggtgcccacctgccatttgcatgaggtcaggatattctgactctagtcgccatg 295
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 attacaggtacccacctgccatttgcatgaggtcaggatattctgactctagtcgccatg 41

                                                   
Query: 296 catgcacagaaaacacgttaatcacagagtatctccccgc 335
           | ||||||| ||||||||||||||||||||||||||||||
Sbjct: 40  cgtgcacagcaaacacgttaatcacagagtatctccccgc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 772
Length adjustment: 9
Effective length of query: 362
Effective length of database: 763
Effective search space:   276206
Effective search space used:   276206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)