BAC Information

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BAC

Clone NameMSMg01-438P20
Chromosome17 (Build37)
Map Location 64,880,260 - 64,880,748
singlet/doubletsinglet
Overlap genenone
Upstream genePpia-ps17_1026.1, LOC638867, LOC668677, A930002H24Rik, Fert2, LOC669778, Pja2, LOC100043582
Downstream geneMan2a1, 4930583I09Rik, LOC100043871, E130009J12Rik, LOC668655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438P20.T7 (MSMg01no438_p20.b1)MSMg01-438P20.TJ (MSMg01no438_p20.g1)
ACCAG529453AG529454
length761761
length of high quality
(start - end)		489 (70 - 558)499 (71 - 569)
definitionCHROMAT_FILE: MSMg01no438_p20.b1 PHD_FILE: MSMg01no438_p20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:58 2005CHROMAT_FILE: MSMg01no438_p20.g1 PHD_FILE: MSMg01no438_p20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCGACCACTTTCCAGAATCCCACAACCTCCCTGGAGTTTATCTAACC
TCCCACTATTGAGAAGACAATGATTCTGTCTGTCTTGCTCAGTGCTCTAT
CTATAGGACTTAGTAACTAAAACACAGGAGGCCCTCCATGGATGGGTGTG
GCCACACCCTTCCCCTTGCTCTTATAAATATTCAACAAAGCTGCGGAGTG
TGGCCTGTTCTGCGTGACTGAGTTCATTGTAAAAGCTGGAACGCTGCAGT
TGGGTTAGACATCGGATTTGGTGTTAAACTGGATCACACTCGTGGATGTG
GGAGAAAGGGTGGAGAGCCATAGACAACAAGCTTGCAAATGTTTGTGGCC
TGTGTAGATCTTTACCACTTCCTTCTTGTGAGTTTCAGACTATGAGGCAA
GGTTCTGCAATCCTCAGAGTGCAGGAAAGCCCCTGAAAACATGAAAATCT
GGGGTCGGGGGATGGAAGACAGGAGGACACACACGCAAAGTTAACTTCTC
CCTAGCTTTGCAATACCAAACGTGCTTAGTAGGCCAATGCCAAGAACTAC
CACACGGGGGTTAAAATTGTAACCTCGAAGCTTCTGACCATGACTATGCT
TCCTAAAGGCTCAAGGGATAAGGCCATCTATTCCCGAATTTGATGCCACC
GGCCTGACATTATAAAACCCTATTGACTCTTGGATCGTGTGGTCTCTAGT
TTTCTGCTCTG

ATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGAAGGTAAACCCTCAGGAATGGTATAGCT
GGATCATACAAATCATATGTGTTTTAGTTATTAGAGGATCTGCCATACTT
CTTTCTACAATGGCTAAAATAATTTTCCTTCCCAGCAACAGTGTTTAAGG
GTTCCCATTTGTCTACATTCTTGTCTTTATTTATTATTTGTCTTGTTCAG
GCCACTGTCATTCTGACTAGAGAGAGATCAAATCTCACTGTACTAACCAG
CCTTTTTCTCCTGGTGAGATTGGATTTCTTTCTTTCATAAGATTATCCGT
TATTTGTCTCTCATCTTTTGGGAACTCTGTTCATTTTGTTAGGCTTGTTT
GGTTGCTTGCCTAGTTTGTTTGTTTGAATTCTCTGTGTAGATGCTAATCC
TCTGTCATGTGTACAGCTACCAAAGACTTTCTTCCATTCTCTAGATTCTA
CAGAAACTTTAATATCATGGGGTCCCAACTTGTCAGCTGTTAGCATTCTT
TCCTAAACAACTGAAGTTCTGCTGAGAAAGTCTTTGCCTATGTCAGGATC
TTTAAGGATGCTCTCTATTTTACCTCCACAATTCGGGAACCAACTCTTAC
TTTAACCCTTTGATCCAGGGGAAGTTGAAAAAATTTTTAAATTTGTCTTT
TTATAAAAAAAAATGCCCCCTTTCTTTGTGCTTGAGTTTGGGAAAAATTC
TTCCATGCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_p20.b1 MSMg01no438_p20.b1 CHROMAT_FILE:
MSMg01no438_p20.b1 PHD_FILE: MSMg01no438_p20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:58 2005
         (489 letters)



>mm_chr17_64880060_64880948
          Length = 889

 Score =  915 bits (473), Expect = 0.0
 Identities = 485/489 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcccacaacctccctggagtttatctaacctcccactattgagaagacaatgattctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcccacaacctccctggagtttatctaacctcccactattgagaagacaatgattctgt 260

                                                                       
Query: 61  ctgtcttgctcagtgctctatctataggacttagtaactaaaacacaggaggccctccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtcttgctcagtgctctatctataggacttagtaactaaaacacaggaggccctccat 320

                                                                       
Query: 121 ggatgggtgtggccacacccttccccttgctcttataaatattcaacaaagctgcggagt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 ggatgggtgtggccacacccttccccttgctcttataaatattcaacaaagctgcgaagt 380

                                                                       
Query: 181 gtggcctgttctgcgtgactgagttcattgtaaaagctggaacgctgcagttgggttaga 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 gtggcctgttctgcgtgactgagttcattgtaaaagctggaacactgcagttgggttaga 440

                                                                       
Query: 241 catcggatttggtgttaaactggatcacactcgtggatgtgggagaaagggtggagagcc 300
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catcggatttggtgggaaactggatcacactcgtggatgtgggagaaagggtggagagcc 500

                                                                       
Query: 301 atagacaacaagcttgcaaatgtttgtggcctgtgtagatctttaccacttccttcttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atagacaacaagcttgcaaatgtttgtggcctgtgtagatctttaccacttccttcttgt 560

                                                                       
Query: 361 gagtttcagactatgaggcaaggttctgcaatcctcagagtgcaggaaagcccctgaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagtttcagactatgaggcaaggttctgcaatcctcagagtgcaggaaagcccctgaaaa 620

                                                                       
Query: 421 catgaaaatctggggtcgggggatggaagacaggaggacacacacgcaaagttaacttct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catgaaaatctggggtcgggggatggaagacaggaggacacacacgcaaagttaacttct 680

                    
Query: 481 ccctagctt 489
           |||||||||
Sbjct: 681 ccctagctt 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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