BAC Information

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BAC

Clone NameMSMg01-440C18
Chromosome17 (Build37)
Map Location 24,165,214 - 24,357,109
singlet/doubletdoublet
Overlap genePrss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik
Upstream geneLOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225
Downstream geneCcnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440C18.T7 (MSMg01no440_c18.b1)MSMg01-440C18.TJ (MSMg01no440_c18.g1)
ACCAG530351AG530352
length755741
length of high quality
(start - end)		542 (50 - 591)512 (78 - 589)
definitionCHROMAT_FILE: MSMg01no440_c18.b1 PHD_FILE: MSMg01no440_c18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:31 2005CHROMAT_FILE: MSMg01no440_c18.g1 PHD_FILE: MSMg01no440_c18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,356,573 - 24,357,109)(24,165,214 - 24,165,725)
sequence
NNNNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGAT
CCGCGGAATTCTTGCATGTTTCCTGACGTTCATAGCATGTGCACCGAGTT
CTCAAGATCTCGAGGAGCTGGAACTTTTGACCCAGGCTCTGGAGAAGGCT
GTACGTGTGAGGAAAGGCGTGTCCAATGCTGGACAAAGAGACAGAACCCC
CACTCTGACATCTAAGGCAGCCACTTCTGGTGCCGCTGCCGCCTCCCATC
CTCGGGCTCCCAGCCGGGGTGGCAGCCGTGTATTGGGTACAAGATCCACC
AAGGGTATACAGCGGGCCACAGCCCCTCCCAAGGATTACCCTGAGCACAG
ACTACGATCAAAGGGTGATAAGACCCATGTAAGAACACAAGACCAAACTA
CTGGGTATGGACCAGACCTCAGGGACCAACAAATGACCCCGTCATCTGCT
CATCACACCACAGAACTCTTCGCATTAAAGGAGAAGGGGTAAGCTTCCCA
GACGCTCGTATCCTGACAGGGCATTGAGCTGGTTGAGGAAGCCCCTGGTG
CCGACCCGTAAGGGTCATGCACTGAAGCAAACAGGGCAGAACAGGGTTGG
GATGGGATCAGGTTTGTCGTTCTGGAGCCTAACCAGCCCATGAGCTCTCT
GGACTGGGCGAGCACCCACCCTCCTCTACAAACCGTTTTCAAAAAGCTTG
TCCGAAATTAACTGTTTAAAGAAAAGAGGGGAGAAAGTTCCCCCCCTTGG
TTTCT

NCCACGATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGTTCTCAAGTGGCTCTAGCTT
GTGACAAACCAACCTAAAACCAAGCAGGATAGAGGCTGAGACTCTAACTG
GCAGAGGATGCCTGACCAGAGAGGAACATGCTCAGAGCAAGTGTCACAGC
AGGTGGACAGGGAGGCTGTGGGTGACAGACTAGGGAGACCAAGGGAGGGT
AGGAAGGGGCCACAGAGATGAGGGTGACCCATAGCTCAAGGCCCTGGAAG
TGCTAACAGGAGATGGTAAACAATTACTATGCATTTGATAAGTTTATCAG
TTAAAAAAGTGGAGGCCATCAAAAACACTAAGAATTATTATTTTTTAAAA
AATAAAGAAACCTCTGCATATATAGTCATGTAGTTTGATCTTCTTGTGAG
AGCAGGGGCTGTCTCTGACTTTTTTATCTGCTTTTGGGGCCCTTTCCTCA
TACTGGGTTGCCTTGTTCAACCTTAACCACGAGGGGAGGTGTCTAGTCTT
ACTACCACTTGATTTGCCATGTTTGGTTGATATCCTGGAGGCCTGTCCTT
TTCTGAAGAGAATAAGAGGAGCATTGGATGTATTGCTTTGCCCTTTATCT
ACTTCTCCCTATTTTCCGTTTTTTCCTCACCTTATCCTTCCTTCACTTTA
CTTCATACTTTCTCTGTACCTCGCTTTTCTTTTTTCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_c18.b1 MSMg01no440_c18.b1 CHROMAT_FILE:
MSMg01no440_c18.b1 PHD_FILE: MSMg01no440_c18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:31 2005
         (542 letters)



>mm_chr17_24356368_24357309
          Length = 942

 Score = 1023 bits (529), Expect = 0.0
 Identities = 535/537 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattcttgcatgtttcctgacgttcatagcatgtgcaccgagttctcaagatctcgag 65
           |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ggaattcttgcatggttcttgacgttcatagcatgtgcaccgagttctcaagatctcgag 683

                                                                       
Query: 66  gagctggaacttttgacccaggctctggagaaggctgtacgtgtgaggaaaggcgtgtcc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gagctggaacttttgacccaggctctggagaaggctgtacgtgtgaggaaaggcgtgtcc 623

                                                                       
Query: 126 aatgctggacaaagagacagaacccccactctgacatctaaggcagccacttctggtgcc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aatgctggacaaagagacagaacccccactctgacatctaaggcagccacttctggtgcc 563

                                                                       
Query: 186 gctgccgcctcccatcctcgggctcccagccggggtggcagccgtgtattgggtacaaga 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gctgccgcctcccatcctcgggctcccagccggggtggcagccgtgtattgggtacaaga 503

                                                                       
Query: 246 tccaccaagggtatacagcgggccacagcccctcccaaggattaccctgagcacagacta 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tccaccaagggtatacagcgggccacagcccctcccaaggattaccctgagcacagacta 443

                                                                       
Query: 306 cgatcaaagggtgataagacccatgtaagaacacaagaccaaactactgggtatggacca 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cgatcaaagggtgataagacccatgtaagaacacaagaccaaactactgggtatggacca 383

                                                                       
Query: 366 gacctcagggaccaacaaatgaccccgtcatctgctcatcacaccacagaactcttcgca 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gacctcagggaccaacaaatgaccccgtcatctgctcatcacaccacagaactcttcgca 323

                                                                       
Query: 426 ttaaaggagaaggggtaagcttcccagacgctcgtatcctgacagggcattgagctggtt 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttaaaggagaaggggtaagcttcccagacgctcgtatcctgacagggcattgagctggtt 263

                                                                    
Query: 486 gaggaagcccctggtgccgacccgtaagggtcatgcactgaagcaaacagggcagaa 542
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gaggaagcccctggtgccgacccgtaagggtcatgcactgaagcaaacagggcagaa 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no440_c18.g1 MSMg01no440_c18.g1 CHROMAT_FILE:
MSMg01no440_c18.g1 PHD_FILE: MSMg01no440_c18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:31 2005
         (512 letters)



>mm_chr17_24165014_24165925
          Length = 912

 Score =  990 bits (512), Expect = 0.0
 Identities = 512/512 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgttctcaagtggctctagcttgtgacaaaccaacctaaaaccaagcaggatagaggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgttctcaagtggctctagcttgtgacaaaccaacctaaaaccaagcaggatagaggct 260

                                                                       
Query: 61  gagactctaactggcagaggatgcctgaccagagaggaacatgctcagagcaagtgtcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagactctaactggcagaggatgcctgaccagagaggaacatgctcagagcaagtgtcac 320

                                                                       
Query: 121 agcaggtggacagggaggctgtgggtgacagactagggagaccaagggagggtaggaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcaggtggacagggaggctgtgggtgacagactagggagaccaagggagggtaggaagg 380

                                                                       
Query: 181 ggccacagagatgagggtgacccatagctcaaggccctggaagtgctaacaggagatggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggccacagagatgagggtgacccatagctcaaggccctggaagtgctaacaggagatggt 440

                                                                       
Query: 241 aaacaattactatgcatttgataagtttatcagttaaaaaagtggaggccatcaaaaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacaattactatgcatttgataagtttatcagttaaaaaagtggaggccatcaaaaaca 500

                                                                       
Query: 301 ctaagaattattattttttaaaaaataaagaaacctctgcatatatagtcatgtagtttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctaagaattattattttttaaaaaataaagaaacctctgcatatatagtcatgtagtttg 560

                                                                       
Query: 361 atcttcttgtgagagcaggggctgtctctgacttttttatctgcttttggggccctttcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcttcttgtgagagcaggggctgtctctgacttttttatctgcttttggggccctttcc 620

                                                                       
Query: 421 tcatactgggttgccttgttcaaccttaaccacgaggggaggtgtctagtcttactacca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcatactgggttgccttgttcaaccttaaccacgaggggaggtgtctagtcttactacca 680

                                           
Query: 481 cttgatttgccatgtttggttgatatcctgga 512
           ||||||||||||||||||||||||||||||||
Sbjct: 681 cttgatttgccatgtttggttgatatcctgga 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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