BAC Information

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BAC

Clone NameMSMg01-440D23
Chromosome17 (Build37)
Map Location 6,981,159 - 6,981,654
singlet/doubletsinglet
Overlap geneVil2
Upstream geneSynj2, Serac1, Gtf2h5, 2210038L17Rik, LOC545184, Tulp4, EG433058, Tmem181, LOC100040453, LOC100040471, Dynlt1, LOC547127, LOC100040488, LOC100040500, LOC100040531, LOC100040525, LOC100040563, LOC100040546, LOC100040536, LOC100040556, LOC100040603, LOC100040596, LOC100040631, LOC100040616, Sytl3
Downstream geneLOC100040654, Rshl2b, 1700122H20Rik, Tagap1, Rnaset2b, Gm1604, Rps6ka2, LOC625031, Tcp10b, LOC100038857, LOC667055, 5830477G23Rik, LOC625102, Fndc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440D23.T7 (MSMg01no440_d23.b1)MSMg01-440D23.TJ (MSMg01no440_d23.g1)
ACCAG530409AG530410
length769754
length of high quality
(start - end)		514 (54 - 567)496 (78 - 573)
definitionCHROMAT_FILE: MSMg01no440_d23.b1 PHD_FILE: MSMg01no440_d23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:38 2005CHROMAT_FILE: MSMg01no440_d23.g1 PHD_FILE: MSMg01no440_d23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTTTCCAATTCACTCAGAATCAGCTCCTGTTGGGCC
CAGCAGCACCTCATGCAATCTCAGCTGCTTGGGAGGCTGAGGCCTGCCCA
GGATAGTTGGTGAGGCTTTGTCTGAAGACATAAAACAGTGGGCTGTGAGC
ACAGTCCTGGGTAACATGCTCGCCTAGGATGCATAGAGCCTGGCTGATGA
AAAAAAATATTGAAACTACTCTTGGTTCATAGTATCCTTTCCCCAGAGAC
TTCAAAAAGATGAACAGGCCCGTCAAAGAAGCCAACACTTACAGTTTTAG
CAAGAATAAGAATGTGGTCATAAACTTGATTTCTGGTGACATGCACTACC
AAGAAATTTTAAAAGGACTTTGGGGTTTTTCAGGTATTTAAAAAAAATAT
GGATGAAACAAACATAGTTCTCTCTTGGATGCTTTTCAGTTTTGTAACAT
TTTTGAATGAGCAAGAGAAGAAAGTGATGTCTCATGTACCACACGAGGGT
GGGTTTGTGCTTCTCCATCCTCAATGCTTCCTGAATGGTGCCTGCTCCTG
CCCTCTCCCCATGAAGTCATTTAAGACCCATTCATATGGGGCCAGGGAGA
TGGTTGGGTGGGTAATGCTTTGTGTGAAGACATGATTCAGATACTCCCAG
CCCCCGTAAAACTGACAGCATTTTCCGGGAGGGGGGGGTCGAAGATCCCC
CCCAATTACTCATTTTGAC

NNNNCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTTCCTGTCTGTGTAGTGAGT
GGGCCTGGTGCTGGGGTGTGCCTGGGAGGAGTTCTGTTGGAGAAGGTGAG
TATAGGCAAAGGTCACAGTGAGGTAGGACAGTGATCAGGAGCCAGCGGGG
CCAGGGCAGTTCCCCATGTTGGCTGCTTGCTAGGGGGAAGGCTAGGAGCA
GTTCTGGCCACAGGCTGGTTCCATTTTTATTTTATTTCATTTTTTCATTC
ACTAAGGACCTTTTATTTCCTACAGATAGATGTTTATGCTGTTTCAGAGG
AGAGGAAAACTCTAGGAACACTTTACCCTTTTATTTAATATATCTGAGAG
AACAAAGTTTAAAGGCGGAACAAAAATTCTAACTTCAGCTTCAACTCTCT
CTGATGCAAATAAGGGTGGGGTGGGGTGTCACCCAAGAGGGGGCACACGG
CTCAGTTTGGGCTTAGCTTATTCTCTCTTTTTGTGAACTTGAGGTCCCTT
TCCTCAGACAACTTCTTTCTGTTGTTGGTTTTTTTTTCCTTTTGCCTGGG
AGAAGGTACTGCAACGGGACTGGGGAGGTGGGGGTGGGGCTTTCTTGCTC
CTCAATACTGTGCATCTTTTTTTTTTTTTTATTCTATGCCTGTCCCTTTT
CCTCTTTTCTTTTGTTACTTTTTTTTCTTTCTTGTAACTTTTTTTTGACA
CAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_d23.g1 MSMg01no440_d23.g1 CHROMAT_FILE:
MSMg01no440_d23.g1 PHD_FILE: MSMg01no440_d23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:38 2005
         (496 letters)



>mm_chr17_6980959_6981854
          Length = 896

 Score =  920 bits (476), Expect = 0.0
 Identities = 491/496 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtttcctgtctgtgtagtgagtgggcctggtgctggggtgtgcctgggaggagttctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 tgtttcctgtctgtgtagtgagtgggcctggtgctggggtgtgcctgggaggagttctgt 637

                                                                       
Query: 61  tggagaaggtgagtataggcaaaggtcacagtgaggtaggacagtgatcaggagccagcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tggagaaggtgagtataggcaaaggtcacagtgaggtaggacagtgatcaggagccagcg 577

                                                                       
Query: 121 gggccagggcagttccccatgttggctgcttgctagggggaaggctaggagcagttctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gggccagggcagttccccatgttggctgcttgctagggggaaggctaggagcagttctgg 517

                                                                       
Query: 181 ccacaggctggttccatttttattttatttcattttttcattcactaaggaccttttatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ccacaggctggttccatttttattttatttcattttttcattcactaaggaccttttatt 457

                                                                       
Query: 241 tcctacagatagatgtttatgctgtttcagaggagaggaaaactctaggaacactttacc 300
           |||||| ||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tcctacggatagatggcaatgctgtttcagaggagaggaaaactctaggaacactttacc 397

                                                                       
Query: 301 cttttatttaatatatctgagagaacaaagtttaaaggcggaacaaaaattctaacttca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 cttttatttaatatatctgagagaacaaagtttaaaggcggaacaaaaattctaacttca 337

                                                                       
Query: 361 gcttcaactctctctgatgcaaataagggtggggtggggtgtcacccaagagggggcaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gcttcaactctctctgatgcaaataagggtggggtggggtgtcacccaagagggggcaca 277

                                                                       
Query: 421 cggctcagtttgggcttagcttattctctctttttgtgaacttgaggtccctttcctcag 480
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 cggctcagtttaggcttagcttattctctctttttgtgaacttgaggtccctttcctcag 217

                           
Query: 481 acaacttctttctgtt 496
           ||||||||||||||||
Sbjct: 216 acaacttctttctgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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