BAC Information

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BAC

Clone NameMSMg01-440G17
Chromosome17 (Build37)
Map Location 45,289,438 - 45,453,462
singlet/doubletdoublet
Overlap geneEG210562
Upstream geneClic5, Runx2, Supt3h, 4930564C03Rik
Downstream geneEG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363, Vegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440G17.T7 (MSMg01no440_g17.b1)MSMg01-440G17.TJ (MSMg01no440_g17.g1)
ACCAG530541AG530542
length790762
length of high quality
(start - end)		439 (81 - 519)495 (81 - 575)
definitionCHROMAT_FILE: MSMg01no440_g17.b1 PHD_FILE: MSMg01no440_g17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:52 2005CHROMAT_FILE: MSMg01no440_g17.g1 PHD_FILE: MSMg01no440_g17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,289,438 - 45,289,876)(45,452,968 - 45,453,462)
sequence
NNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCTCATTTTCCCGTGAACAGAAGGAAAAAACAGAAGGG
CCCTGCTGATGCCCCTCGATGAAGACCGACCAAAGAGAGCCCGGAGGGAG
ATATAAAGAGACCTGTTTTAATTGGAAGGCTTTTCCCCTCCATTTTCTTC
TTCGTGTTTTTAAGTTCTGACTTGGATCCTAGAAATTACAGCCTCTTCCA
GCATCGCCTCTGCGGTTGGAAAAATTGCTCATTTCACTTTTTAAACAAAC
AATGGAAAGTTCCTTTTAAAGGAAAAAAAAATCTTATTAGCCCAAGTCCA
AAGAGATCTGCTGAGGCTCTCAAGCAGATCTGAAGAGGTTACCCACCACC
ATGGCTGACATGGTCCCCATGGACAGCTTCACCACAGAGCCCGTGGGACT
CCTTATCCTGAGGGAGGGCTTGCTTCCCAAAAGAGCCCACCCCTCCTGCT
GGAGCCAGGGTCTACTGAAGACCTCACAGGCAACTCACAGAAGGAAACCA
CTCAGACATGGAAGGCAGGGAATATCCTTTTCCCCAAATAAACAGCCTGA
AGAAGCTGCCATTGGGAACAAGGTCCCTTCCGACAAAGCCCCCAATTATG
ATCCCCAGATGCTGGACTCTGGGGGGGGGTCCGCCTTTAAAAAAACTTCC
AGGAAGTTGCCCCCAAGGGAAACCGTGCTTGGGGTGGGCCCCTGTTAATG
GGGCCCTCATGTGGCGGGAAATCTGGGTTTTGTCCTAAAA

NNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCAGTGCTCCTAGATGACA
AACCTGATAATTACAGACAAGTTTGATGTCCACGGGAGGACTGGGCTTCC
AGCTAAGACTCGGGGACCTCAAGGTCACTGACAGAAGGCAGCGGTGGCAT
GTCATATCTCTGTTTAGATGTAACATGAGAGCTGAAAGATGTCTTGTGGC
CCCCCGGGGAGTGAAAGTGGGACTCTCCTGGTGCAGTCACAGAAGCCATG
CTCACAAGCTCTCCCAGCATCCTCAGCAAGACACATGGTTATAGCCATTT
TACAGAAAGAATCTCCAAGTGGTCCCGAGACCTTTGGATTTGGCTATGTA
TGTAAGTTGAAGGAGAGGTGGAAAAGTGGTATACAAGATCAACGTTACAA
AGTGTCTGAGATGACTGTGTGTGGAAGCAGATCCGGCACAGTGTTGTTGT
CTGGNCAAAGTGCCCTGTCCCCTCCCTTGCCCACTTCCTTTCTAAAACAG
GATGGTAGAGGGGCTAGCTGTATGTCCTGGTGGCTGGCCCAAACGCTAAA
TTGTGAAATTTGAAAACCGAGTTCAATCTTGCTCTGGCCTTGACGGGGGG
GAAAGGAATCCCCCCCCCTGGGCCCCTTCTTCTTCCAAAAGGAGGCCTTT
TTAGCCCCTTTCGGGCCTTGGCCTAGGGCTGTGTTCAAAATCTTGTTTTT
TCTAAAACACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_g17.b1 MSMg01no440_g17.b1 CHROMAT_FILE:
MSMg01no440_g17.b1 PHD_FILE: MSMg01no440_g17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:52 2005
         (439 letters)



>mm_chr17_45289238_45290076
          Length = 839

 Score =  841 bits (435), Expect = 0.0
 Identities = 438/439 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaggaaaaaacagaagggccctgctgatgcccctcgatgaagaccgaccaaagagagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaggaaaaaacagaagggccctgctgatgcccctcgatgaagaccgaccaaagagagc 260

                                                                       
Query: 61  ccggagggagatataaagagacctgttttaattggaaggcttttcccctccattttcttc 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccggagggaggtataaagagacctgttttaattggaaggcttttcccctccattttcttc 320

                                                                       
Query: 121 ttcgtgtttttaagttctgacttggatcctagaaattacagcctcttccagcatcgcctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcgtgtttttaagttctgacttggatcctagaaattacagcctcttccagcatcgcctc 380

                                                                       
Query: 181 tgcggttggaaaaattgctcatttcactttttaaacaaacaatggaaagttccttttaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcggttggaaaaattgctcatttcactttttaaacaaacaatggaaagttccttttaaa 440

                                                                       
Query: 241 ggaaaaaaaaatcttattagcccaagtccaaagagatctgctgaggctctcaagcagatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaaaaaaaaatcttattagcccaagtccaaagagatctgctgaggctctcaagcagatc 500

                                                                       
Query: 301 tgaagaggttacccaccaccatggctgacatggtccccatggacagcttcaccacagagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaagaggttacccaccaccatggctgacatggtccccatggacagcttcaccacagagc 560

                                                                       
Query: 361 ccgtgggactccttatcctgagggagggcttgcttcccaaaagagcccacccctcctgct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccgtgggactccttatcctgagggagggcttgcttcccaaaagagcccacccctcctgct 620

                              
Query: 421 ggagccagggtctactgaa 439
           |||||||||||||||||||
Sbjct: 621 ggagccagggtctactgaa 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no440_g17.g1 MSMg01no440_g17.g1 CHROMAT_FILE:
MSMg01no440_g17.g1 PHD_FILE: MSMg01no440_g17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:52 2005
         (495 letters)



>mm_chr17_45452768_45453662
          Length = 895

 Score =  897 bits (464), Expect = 0.0
 Identities = 487/495 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccagtgctcctagatgacaaacctgataattacagacaagtttgatgtccacgggagga 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 695 cccagtgctcctagatgacaaacctgataattacagacaagtatgatgtccacgggagga 636

                                                                       
Query: 61  ctgggcttccagctaagactcggggacctcaaggtcactgacagaaggcagcggtggcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ctgggcttccagctaagactcggggacctcaaggtcactgacagaaggcagcggtggcat 576

                                                                       
Query: 121 gtcatatctctgtttagatgtaacatgagagctgaaagatgtcttgtggccccccgggga 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 575 gtcatatctctgtttagatgtaacatgagagctgaaagatgtcttgtggccccctgggga 516

                                                                       
Query: 181 gtgaaagtgggactctcctggtgcagtcacagaagccatgctcacaagctctcccagcat 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gtgaaggtgggactctcctggtgcagtcacagaagccatgctcacaagctctcccagcat 456

                                                                       
Query: 241 cctcagcaagacacatggttatagccattttacagaaagaatctccaagtggtcccgaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cctcagcaagacacatggttatagccattttacagaaagaatctccaagtggtcccgaga 396

                                                                       
Query: 301 cctttggatttggctatgtatgtaagttgaaggagaggtggaaaagtggtatacaagatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cctttggatttggctatgtatgtaagttgaaggagaggtggaaaagtggtatacaagatc 336

                                                                       
Query: 361 aacgttacaaagtgtctgagatgactgtgtgtggaagcagatccggcacagtgttgttgt 420
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aacgttacaaagtgtctgatatgactgtgtgtggaagcagatccggcacagtgttgttgt 276

                                                                       
Query: 421 ctggncaaagtgccctgtcccctcccttgcccacttcctttctaaaacaggatggtagag 480
           |||| |||||| |||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 275 ctggtcaaagttccctgtcccctccctttcccgcttcctttctaaaacaggatggtagag 216

                          
Query: 481 gggctagctgtatgt 495
           |||||||||||||||
Sbjct: 215 gggctagctgtatgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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