BAC Information

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BAC

Clone NameMSMg01-440M08
Chromosome17 (Build37)
Map Location 37,190,485 - 37,356,210
singlet/doubletdoublet
Overlap geneGabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95
Upstream geneEG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog
Downstream geneOlfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123, Olfr124, Olfr125, LOC672822, Olfr126, Olfr127, Olfr128, Ppia-ps17_697.1, Olfr761, Olfr1552-ps1, LOC100043265, Olfr129, Olfr130, Olfr131, Olfr132, Olfr133, Olfr134, Olfr135
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440M08.T7 (MSMg01no440_m08.b1)MSMg01-440M08.TJ (MSMg01no440_m08.g1)
ACCAG530808AG530809
length770747
length of high quality
(start - end)		271 (58 - 328)417 (83 - 499)
definitionCHROMAT_FILE: MSMg01no440_m08.b1 PHD_FILE: MSMg01no440_m08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:20 2005CHROMAT_FILE: MSMg01no440_m08.g1 PHD_FILE: MSMg01no440_m08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,355,940 - 37,356,210)(37,190,485 - 37,190,901)
sequence
NAAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATC
CGCGGAATTCCTAGGAATCTCGCACTCCAGTGGTTGGCAAGAAATGGCCT
TGAACATTCCTACTTTTAGAGTACTCTCTATTTTGAAAAAGACAGAGATC
GCTGAGAAGTGGGTTAAAGGAGAATGCAAAGCTATTCTGAGTGTGTGCAT
GTCCCAAGAGGAGGAACAAAGATGTGAAGAAGAAATTTCTGGTTTCTTTG
AAAACTCAGTTATGATGTTTTGCTGGGGCAGAGAGGTAAAGGGATTATTT
GATAAACCAAACACATAAAAGAATGTTATTTATACTCATAAAGGAATATT
TTGCTGACACAGAGGATGTTTTGCTGAAGCAGACATGTGAGAGGATGCAT
GATGTTTAGAAAGAATATAAATATGACCCACAGACAGAAAGGGGAAGCTG
TGGCATTGATTCACCTTGTTCCACCTTGCTAGTCTTATTCGTTGTGAGTT
CATAGAGAGTATCTCACCATAGAACTTCTCATAAAATTCCAGCTGCTTCT
TTCCACTTCCACAGACTCAGGCCAAGGTGGGTGAGCTTTCTGGTTTCTTC
CTGTTTCAACTGCCCTTTGTTGATCCTGAATGGTGTATGCCAATGGTACT
TGGTCGCACCTTGTGTATTCATGGTGTTTTTTTCCTATATCTCCTGTTTT
TCCTTAATTCATTCCCTCCTTACATATTGTTATTTTTAATTCTTCTCTTC
ATTTTCTTTTTTTTTTTTTT

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTCTATGTCTATTTAT
CTGGATCTCTTTTATTTTAGATTCTTCTGCACTCCCCCCTCCCCCTTTTT
TTTTTCTAATGGACTCATCAAATGTCAGGGCCCAGCAGGAAAGGACAGGG
TGCAGAGCAGACACCCTACTGATCTTGTTCTTGTTCTCTGAAATTGAAGG
TGGAAATTTCATTGAGGGAGCTGCCTAGGGATCTGCAGAGAATGTATTTG
TGTTTCCTGAGCAGATGTTCAGACCCTATATTTATGGGATGAGGTGGGGT
ACAGAGATGACCAAAGAGAGTGGGCTTAGGGTTGTTTGAGAATAAGCAGA
AGTGGGAGACAGCAGAGTATGTGTTAATATGGAAGGAAGGGCATGCAGTT
TTGAGTAGGGCCAACGTGCCAGATGCAAGACAAGAGAAGGACGCTTAAGG
CAAAAGCAAAGTCTAGAAATTTGACAGGAAGAAGAATGCGGCGCTGGCAG
TGAATAGTTAAGGAAAGGTCCTAGGTTGCCCAAGACACTAGGCAATGTGA
GATGGGTATGTGAGTTCGTAGTGTTGAATCTCTATACTTTTACTATTCTT
CACCCCCATATCTCACACTCCTTTATTTTTTTTCCTACCATATCTTCCCC
TTTCAACACTTCTTTTTTCTTTCTCCTATAACTTCCCTCTTGTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_m08.b1 MSMg01no440_m08.b1 CHROMAT_FILE:
MSMg01no440_m08.b1 PHD_FILE: MSMg01no440_m08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:20 2005
         (271 letters)



>mm_chr17_37355844_37356514
          Length = 671

 Score =  509 bits (263), Expect = e-149
 Identities = 269/271 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcctaggaatctcgcactccagtggttggcaagaaatggccttgaacattcctactttt 60
           |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ttcctaggaaactagcactccagtggttggcaagaaatggccttgaacattcctactttt 308

                                                                       
Query: 61  agagtactctctattttgaaaaagacagagatcgctgagaagtgggttaaaggagaatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 agagtactctctattttgaaaaagacagagatcgctgagaagtgggttaaaggagaatgc 248

                                                                       
Query: 121 aaagctattctgagtgtgtgcatgtcccaagaggaggaacaaagatgtgaagaagaaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aaagctattctgagtgtgtgcatgtcccaagaggaggaacaaagatgtgaagaagaaatt 188

                                                                       
Query: 181 tctggtttctttgaaaactcagttatgatgttttgctggggcagagaggtaaagggatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tctggtttctttgaaaactcagttatgatgttttgctggggcagagaggtaaagggatta 128

                                          
Query: 241 tttgataaaccaaacacataaaagaatgtta 271
           |||||||||||||||||||||||||||||||
Sbjct: 127 tttgataaaccaaacacataaaagaatgtta 97


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no440_m08.g1 MSMg01no440_m08.g1 CHROMAT_FILE:
MSMg01no440_m08.g1 PHD_FILE: MSMg01no440_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:20 2005
         (417 letters)



>mm_chr17_37190285_37191101
          Length = 817

 Score =  752 bits (389), Expect = 0.0
 Identities = 410/417 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactctatgtctatttatctggatctcttttattttagattcttctgcactcccccctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactctatgtctatttatctggatctcttttattttagattcttctgcactcccccctcc 260

                                                                       
Query: 61  cccttttttttttctaatggactcatcaaatgtcagggcccagcaggaaaggacagggtg 120
           ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 cccctttttttttctaatggactcgtcaaatgtcagggcccagcaggaaaggacagggtg 320

                                                                       
Query: 121 cagagcagacaccctactgatcttgttcttgttctctgaaattgaaggtggaaatttcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagagcagacaccctactgatcttgttcttgttctctgaaattgaaggtggaaatttcat 380

                                                                       
Query: 181 tgagggagctgcctagggatctgcagagaatgtatttgtgtttcctgagcagatgttcag 240
           |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 381 tgagggagctgcctagggatctgcagagaacgtatttgtatttcctgagcagatgttcag 440

                                                                       
Query: 241 accctatatttatgggatgaggtggggtacagagatgaccaaagagagtgggcttagggt 300
           ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accctataaacatgggatgaggtggggtacagagatgaccaaagagagtgggcttagggt 500

                                                                       
Query: 301 tgtttgagaataagcagaagtgggagacagcagagtatgtgttaatatggaaggaagggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtttgagaataagcagaagtgggagacagcagagtatgtgttaatatggaaggaagggc 560

                                                                    
Query: 361 atgcagttttgagtagggccaacgtgccagatgcaagacaagagaaggacgcttaag 417
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgcagttttgagtagggccaacgtgccagatgcaagacaagagaaggacgcttaag 617


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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